Monthly Archives: April 2011

RNA-Seq Analysis Software – Commercial Packages

A list of the RNA-Seq data analysis software packages available from commercial providers.  Again, if I’ve missed something, please send me a note and I will be happy to add to this list. Avidis NGS – http://www.avadis-ngs.com/applications/rna_seq – Find fused ...

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Categorization of Data Analysis Tools

We have been trying to keep track of all the data analysis tools available for handling RNA-Seq data that are freely available on the web.  We just categorized these tools in the left sidebar at the suggestion of one of ...

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A novel pathway of small guide RNA maturation

An international team led by investigators at Umeå University in Sweden describes a “novel pathway of small guide RNA maturation and the first example of a host factor — RNase III — required for bacterial RNA-mediated immunity against invaders.” Using ...

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RNA-Seq News…

New Software Estimation of alternative splicing isoform frequencies from RNA-Seq data This algorithm, referred to as IsoEM, is based on disambiguating of information provided by the distribution of insert sizes generated during sequencing library preparation, and takes advantage of base ...

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Transcript Profiling in Two Alfalfa Genotypes

Alfalfa, [Medicago sativa (L.) sativa], a widely-grown perennial forage has potential for development as a cellulosic ethanol feedstock. However, the genomics of alfalfa, a non-model species, is still in its infancy. The recent advent of RNA-Seq, a massively parallel sequencing ...

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