Analysis Pipelines

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PRADA: Pipeline for RNA sequencing Data Analysis

PRADA: Pipeline for RNA sequencing Data Analysis

Technological advances in high throughput sequencing necessitate improved computational tools for processing and analyzing large-scale datasets in a systematic, automated manner. For that purpose, researchers at the MD Anderson Cancer Center have developed PRADA (Pipeline for RNA-Sequencing Data Analysis), a ...

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INsPeCT: INtegrative Platform for Cancer Transcriptomics

INsPeCT: INtegrative Platform for Cancer Transcriptomics

The emergence of transcriptomics, fuelled by high-throughput sequencing technologies, has changed the nature of cancer research and resulted in a massive accumulation of data. Computational analysis, integration, and data visualization are now major bottlenecks in cancer biology and translational research. ...

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Orione – a web-based framework for NGS analysis in microbiology

Orione – a web-based framework for NGS analysis in microbiology

End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that use different software packages is difficult due to a lack ...

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OMIGA: Optimized Maker-Based Insect Genome Annotation

OMIGA: Optimized Maker-Based Insect Genome Annotation

Insects are one of the largest classes of animals on Earth and constitute more than half of all living species. The i5k initiative has begun sequencing of more than 5,000 insect genomes, which should greatly help in exploring insect resource ...

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