Analysis Pipelines

Feed Subscription

RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR

RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR

The ability to easily and efficiently analyse RNA-sequencing data is a key strength of the Bioconductor project. Starting with counts summarised at the gene-level, a typical analysis involves pre-processing, exploratory data analysis, differential expression testing and pathway analysis with the ...

Read More »

Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq

Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq

For identifying the genes that are regulated by a transcription factor (TF), Nagoya University researchers have established an analytical pipeline that combines genomic systematic evolution of ligands by exponential enrichment (gSELEX)-Seq and RNA-Seq. Here, SELEX was used to select DNA ...

Read More »

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

Toil is portable, open-source workflow software that supports contemporary workflow definition languages and can be used to securely and reproducibly run scientific workflows efficiently at large-scale. To demonstrate Toil, University of California Santa Cruz researchers processed over 20,000 RNA-seq samples ...

Read More »
Scroll To Top