Expression and Quantification

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PANDORA – Systematic integration of RNA-Seq statistical algorithms

PANDORA – Systematic integration of RNA-Seq statistical algorithms

RNA-Seq is gradually becoming the standard tool for transcriptomic expression studies in biological research. Although considerable progress has been recorded in the development of statistical algorithms for the detection of differentially expressed genes using RNA-Seq data, the list of detected ...

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QuasR – Quantification and annotation of short reads in R

QuasR – Quantification and annotation of short reads in R

QuasR is a package for the integrated analysis of high-throughput sequencing data in R, covering all steps from read preprocessing, alignment and quality control to quantification. QuasR supports different experiment types (including RNA-seq, ChIP-seq and Bis-seq) and analysis variants (e.g. ...

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