Other Tools

Feed Subscription

INsPeCT: INtegrative Platform for Cancer Transcriptomics

INsPeCT: INtegrative Platform for Cancer Transcriptomics

The emergence of transcriptomics, fuelled by high-throughput sequencing technologies, has changed the nature of cancer research and resulted in a massive accumulation of data. Computational analysis, integration, and data visualization are now major bottlenecks in cancer biology and translational research. ...

Read More »

Optimal Bayesian Classification Tutorial

Optimal Bayesian Classification Tutorial

An overview of the SAMCNet package (available at https://github.com/binarybana/samcnet) that implements optimal Bayesian classification for RNA-Seq data as part of an upcoming publication. (Publication details will follow once reviewed and accepted)

Read More »

bwtool: A tool for bigWig files

bwtool: A tool for bigWig files

BigWig files are a compressed, indexed, binary format for genome-wide signal data for calculations (e.g. GC percent) or experiments (e.g. ChIP-seq/RNA-seq read depth). bwtool is a tool designed to read bigWig files rapidly and efficiently, providing functionality for extracting data ...

Read More »

Sequencing error correction without a reference genome

Sequencing error correction without a reference genome

Next (second) generation sequencing is an increasingly important tool for many areas of molecular biology, however, care must be taken when interpreting its output. Even a low error rate can cause a large number of errors due to the high ...

Read More »
Scroll To Top