Other Tools

Feed Subscription

PEAT – paired-end sequencing adapter trimming algorithm

PEAT – paired-end sequencing adapter trimming algorithm

In modern paired-end sequencing protocols short DNA fragments lead to adapter-appended reads. Current paired-end adapter removal approaches trim adapter by scanning the fragment of adapter on the 3′ end of the reads, which are not competent in some applications. Researchers ...

Read More »

Kpath ‐ statistical reference-based compression for short reads

Kpath ‐ statistical reference-based compression for short reads

Storing, transmitting, and archiving data produced by next generation sequencing is a significant computational burden. New compression techniques tailored to short-read sequence data are needed. Researchers from Carnegie Mellon University and Stony Brook University have devloped an approach to compression ...

Read More »

scLVM – identification of hidden subpopulations of cells in RNA-Seq data

scLVM –  identification of hidden subpopulations of cells in RNA-Seq data

Highlights New method improves single-cell genomics analyses; Method clarifies the true differences and similarities between cells by modelling relatedness and removing confounding variables; Scientists can use known molecular pathways to better understand cancer cells, differentiation processes and the pathogenesis of ...

Read More »
Scroll To Top