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TarPmiR – a new approach for microRNA target site prediction

TarPmiR – a new approach for microRNA target site prediction

The identification of microRNA (miRNA) target sites is fundamentally important for studying gene regulation. There are dozens of computational methods available for miRNA target site prediction. Despite their existence, we still cannot reliably identify miRNA target sites, partially due to ...

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MicroScope: RNA-seq software analysis suite for gene expression heatmaps

MicroScope: RNA-seq software analysis suite for gene expression heatmaps

Researchers at the University of Miami Miller School of Medicine have developed a user-friendly ChIP-seq and RNA-seq software suite for the interactive visualization and analysis of gene expression heatmaps, including integrated features to support: principal component analysis, differential expression analysis, gene ...

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Parametric analysis of RNA-seq expression data

Parametric analysis of RNA-seq expression data

Various methods had been introduced for normalization and comparison of RNA-seq count data. However, they lacked objectivity because they based on ad hoc assumptions that were never verified their appropriateness. Here, researchers from Akita Prefectural University introduced a method that assumes ...

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