Pathway Analysis

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cGRNB – combinatorial Gene Regulatory Networks Builder

cGRNB – combinatorial Gene Regulatory Networks Builder

We are witnessing rapid progress in the development of methodologies for building the combinatorial gene regulatory networks involving both TFs (Transcription Factors) and miRNAs (microRNAs). There are a few tools available to do these jobs but most of them are ...

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New RNA-Seq Pathway and Gene-set Analysis Workflows in R/Bioconductor

New RNA-Seq Pathway and Gene-set Analysis Workflows in R/Bioconductor

The gage package (2.12.0) now includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Analysis Workflows“. Note you need to update to current release versions of R(3.0.2)/ Bioconductor(2.13) to use all the features. Please check it out: http://bioconductor.org/packages/rel…html/gage.html http://bioconductor.org/packages/rel…eqWorkflow.pdf We ...

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SeqGSEA – Gene Set Enrichment Analysis of RNA-Seq Data

SeqGSEA – Gene Set Enrichment Analysis of RNA-Seq Data

Transcriptome sequencing (RNA-Seq) has become a key technology in transcriptome studies because it can quantify overall expression levels and the degree of alternative splicing for each gene simultaneously. Many methods and tools, including quite a few R / Bioconductor packages, ...

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