Transcriptome Assembly Tools

Feed Subscription

RNA-Seq Analysis with STAR

RNA-Seq Analysis with STAR

NASB2015 Lecture 21- RNA seq Analysis with STAR In this lecture Yan Kou from the Ma’ayan Lab demonstrates how to run the popular genome aligner STAR for RNA-seq analysis

Read More »

De novo assembly of bacterial transcriptomes from RNA-seq data

De novo assembly of bacterial transcriptomes from RNA-seq data

A number of mature computational tools exist for both reference-based transcriptome assembly and de novo transcriptome assembly. However, most of the aforementioned tools were designed primarily for eukaryotic transcriptomes. Bacterial transcriptome assembly faces different challenges than eukaryotic transcriptome assembly. For ...

Read More »

Bayesembler – bayesian transcriptome assembly

Bayesembler – bayesian transcriptome assembly

RNA-seq allows for simultaneous transcript discovery and quantification, but reconstructing complete transcripts from such data remains difficult. Here, researchers from the University of Copenhagen introduce the Bayesembler, a novel probabilistic method for transcriptome assembly built on a Bayesian model of ...

Read More »
Scroll To Top