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Benchmark – Comparison of Different NGS Mappers

Benchmark – Comparison of Different NGS Mappers

Here, researchers at ecSeq Bioinformatics provide detailed performance comparisons of NGS read aligners. They stress that benchmarks only measure specific aspects and may not be used to claim any universal superiority or inferiority of a particular tool. In order to ...

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JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

JAGuaR is an alignment protocol for RNA-seq reads that uses an extended reference to increase alignment sensitivity. It uses BWA to align reads to the genome and reference transcript models (including annotated exon-exon junctions) specifically allowing for the possibility of ...

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