Complex RNA-Seq experiment analysis with SeqMonk

SeqMonk has a number of tools which make it easy to analyse complex RNA-Seq experiments containing biological replicates and multiple biological conditions. In this tutorial we show how to check the quality of your data and then perform a differential analysis across multiple conditions, splitting the results into groups of genes with similar expression profiles across your conditions, to make interpretation of the results as easy as possible.

http://www.bioinformatics.babraham.ac.uk/projects/seqmonk/