Jan

24

GitHub – Shared RNA-Seq Analysis Code

Filed Under Data Analysis, Data Analysis, Other Tools 

GitHubGitHub helps people build software together.

yarden/MISO
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

jrbustosm/rna-seq
rna-seq analysis utils

drli/RNA-seq
RNA-seq data analysis

andymckenzie/RNA-Seq
algorithms for analyzing rna-seq data

jnhutchinson/ensembl_based_RNA_seq
ensembl_based_RNA_seq

vsbuffalo/rna-seq-example
An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)

fatPerlHacker/rna-seq-analysis-pipeline

sgivan/RNA-Seq-Toolkit
Collection of scripts to facilitate the analysis of RNA-Seq data

gusevfe/RnaSeqAB
Tool for detecting allele bias in Genome vs. RnaSeq data

luwening/RNA-Seq-RP-Pseudogenes

Lots more shared RNA-Seq Code…

Incoming search terms:

  • rna-seq pipeline code
  • rnaseqab test data
  • github tophat cufflink toolkit
  • microrna analysis from est github
  • RNA-Seq Data Analysis (Tophat Cufflinks Pipeline)

Comments

One Response to “GitHub – Shared RNA-Seq Analysis Code”

  1. Nick Schurch on January 25th, 2013 4:40 pm

    um…. these two don’t actually have anything in them:

    jrbustosm/rna-seq – one readme
    drli/RNA-seq – “nothing to see here yet”

    Doe anyone know of a decent blog QC pipeline? ;)

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