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Cambridge Healthtech Institute and Bio-IT World’s Inaugural
RNA-Seq and Transcriptome Analysis
Part of the Fifth International Clinical Genomics…
From Raw Sequence Data To mining Functional Information From Gene Lists Using Galaxy And R
The workshop is currently full. However, if there is…
Event: RNA-Seq analysis using GalaxyStart: July 4, 2013 9:00 amEnd: July 4, 2013 5:30…
The goal of the first GTEx Project Community Meeting is to share information about the project and to showcase advances made during the project's…
General info
Date - 05 Jun 2013 - 07 Jun 2013 Location - Wageningen, the NetherlandsKeywords - RNA-seq, transcriptome, experimental design,…
Dr.Brian Johnson, Department of Entomology & Nematology, UC Davis
Monday, May 6, 2013
4:10–5 p.m.
Location: Genomics Building 1102A
Parking…
Just returned from a great week at the American Association for Cancer Research (AACR) annual meeting and RNA-Seq was a big topic there. Saw some…
Attending RNA-Seq 2013 will arm you with the knowledge and skills you need to optimize the practical application of RNA-Seq technology in your…
You have until this Friday 29th March to register for RNA-Seq 2013 (18-20 June, Boston) at the best possible rates.
RNA-Seq 2013 brings together…
Bioinformatics courses, boot camps and workshops presented by the University of California, Davis Bioinformatics Core
RNA-seq has emerged as a…
The RNA-Seq Blog has formed a partnership with CHI, and as a special offer to readers of the blog, CHI will offer you a partner discount – a…
Title - Analyzing Illumina RNA-seq Data with the CRI
Instructor - Elizabeth Bartom, PhD and Lei Huang, PhD
Location - Biological Sciences…
Your comprehensive guide to applying RNA-Seq in research and drug discovery
Attending RNA-Seq 2013 will arm you with the knowledge and skills you…
Unlimited discovery of the entire RNA universe. Unbiased and unparalleled insights into the active genome.
Whether it’s a need for more accurate…
6th international qPCR & Next Generation Sequencing Event
Symposium & Industrial Exhibition & Application Workshops
18th - 22…
Mapping, Visualization, Basic Analyses
May 13th - 14th 2013, Leipzig, Germany
Scope and Topics
The purpose of this workshop is to get a…
For those who missed it... here are the slides from the recent short training class presented by the Bioinformatics & Research Computing group at…
Identification of the Chromosomal Region Controlling Naringenin Chalcone Accumulation in Melon Rind by a Combination of RNA-Seq and Bulk Segregant…
Centro di Biotecnologie Molecolari, Via Nizza 52, Torino, Italy, 27-28 March 2013
Next Generation Sequencing platforms changes the conventional…
To view the agenda and registration options, visit http://www.xgencongress.com/RNA-Seq
3rd Annual RNA-Seq: Differential Expression in Depth… 
RNA-Seq and Transcriptome Analysis Conference
Workshop on RNA-Seq data analysis
RNA-Seq analysis using Galaxy
Genotype-Tissue Expression Project Community Meeting
Introductory Course – The Power of RNA-seq
Seminar – RNA-Seq for entomologists: addressing questions of sequencing depth and tissue specificity
Back from AACR
Your comprehensive guide to applying RNA-Seq in research and drug discovery
Early Registration Closing Friday – RNA-Seq 2013
April 11, 2013 Boot Camp – Introduction to RNAseq
3rd Annual RNA-Sequencing Conference – Special Offer to Blog Readers
Workshop – Analyzing Illumina RNA-seq Data with the CRI
Final agenda announced – RNA-Seq 2013
RNA-Seq Conference 2013 – Advanced approaches for gathering, interpreting & applying next generation transcriptome data
qPCR & NGS 2013 – Early Bird Registration Peroid & Abstract Call
RNA-seq Bioinformatics – A Practical Introduction
Short Training Class – RNA-seq Analysis in Galaxy – Slide Handouts
RNA-Seq – a big topic at next week’s Plant & Animal Genomes Conference
RNA-Seq Workshop – An introductory course to RNA-Seq
REMINDER – 3rd Annual RNA-Seq Conference Registration Deadline is Friday, Dec 14
Social Networking Pages
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SEQanswers – RNA Sequencing- RNAseq (SOLiD) from 18 - 200 nt June 18, 2013We are interested in small non-coding RNAs. Whomever you ask about the size range of small RNAs, you get a different answer. ;) Lets assume, small... […]GenomicIBK
- Unmapped ratio very high on mouse genome June 17, 2013Hi, My problem regards RNA-Seq data. I've downloaded public data (SAGE libs w/ 6 different samples from mouse liver ) to analyse using ArrayStudio.... […]le.nono
- RNASeq: Read length different from expected June 17, 2013Hello all, I have received paired-end reads for 40 samples. The reads are supposed to be 100bp per end. Instead, 20 of my samples are 101bp per... […]gogodidi
- How to install xgawk June 16, 2013Hi, This is Shrujan, i have a problem while running RNA Sequencing QC. It shows an error that xgawk is not found. So please help me installing... […]shrujan
- RNA Sequencing QC Error while using with Sequence_QC.sh file June 15, 2013Hi, This is Shrujan kumar Madadha, I had an error while running QC for Drosophila Yukuba fastq RNA file using Sequence_QC.sh file of FASTX... […]shrujan
- Cuffmerge related query June 12, 2013I have a query regarding what samples should be merged using cuffmerge, when you have multiple phenotypes (each with replicates). Lets say my mouse... […]ParthavJailwala
- RNAseq (SOLiD) from 18 - 200 nt June 18, 2013
- Biostar – RNA-Seq
- edgeR: very low p-value and very high variance within the group of replicates. What's my problem??I'm using edgeR in order to perform differential expression analysis from RNA-seq experiment. I have 6 samples of tumor cell, same tumor and same treatment: 3 patient with good prognosis and 3 patient with bad prognosis. I want to compare the gene expression among the two groups. I ran the edgeR pakage like follow: x […]
- Normalising tag count to RPKMHi! I was wondering if their is a way to normalise the number of reads in a region and the RPKM of the nearest gene to that region, so that a correlation could be computed. Like the following data shows number of tags in first column and RPKM in second column Tags RPKM 15 0.14619 11 0 203 0.2259 129 10.701 300 7.0772 122 2.3234 346 10.666 77 3.117 201 16.749 […]
- a simple question on RNA-Seq terminologyThis question may be very simple and basic, but I just need to confirm that I understand the differences among those terminologies in the RNA-Seq context. Suppose I have a sample called SLR, and it is sequenced on 5 lanes, so I have (among other output files) BAM files like L1_SLR, L2_SLR, L3_SLR, L5_SLR and L7_SLR.bam. Here, the letter "L" denotes […]
- FInding regions of interest with minimum coverageHi, I have a bam file of all my accepted hits (tophat output) and an gtf file with my genes of interest for which I am trying to find potential antisense transcripts. I would like to create a list - preferably one that can be visualized in a genome browser - that shows all genes that have antisense reads in the accepted hits.bam file provided that there are […]
- How to remove the intronic reads before countingI got RNASeq data in several samples. I checked the FastQC, seems the read quality are good (Hiseq 2000). But the problem is many reads are mapped to intronic region, and the regions have no any reference exons there (Refseq, ensembl, gencode). We don't know what they are. We guess the problem happend in library preparation, the concentration was low. N […]
- Which strand of the mRNA molecule does the sequencer output as a "read"?In Illumina Stranded RNA-Seq (using the dUTP method), do the final reads in the fastq files correspond to the initial molecule (that was transcribed), or to the reverse complement of the molecule? C […]
- edgeR: very low p-value and very high variance within the group of replicates. What's my problem??