Oct

7

LSCC workshop: RNA-seq Analysis – A Hands-on Introduction

Filed Under Events 

LSCCMonday, October 17, 2011 – 9:30am – 1:00pm

VLSCI Boardroom

Topics covered:

  • Mapping RNA-seq data using tophat and bowtie,
  • Analyzing and comparing transcripts using cufflinks,
  • Visualising data using IGV.

You will need to bring your own laptop (Macs and linux machines work better than PCs, but any laptop is OK)

Registration essential: Places are limited. To register, email course coordinator Dr Nathan Hall (below) and please include one or two sentences about the type of NGS research you are doing.

RSVP Email Address for this Event: nhal@unimelb.edu.au

More info: http://www.vlsci.org.au/events/lscc-workshop-rna-seq-analysis

Incoming search terms:

  • igv alternative splicing
  • heat map from rna-seq in igv
  • igv color rna seq data
  • rna seq igv
  • microrna data analysis igv
  • igv rna-seq data
  • igv rna seq alignment
  • IGV heatmap rna seq
  • igv heat map rna seq tutorial
  • visualize fusion igv

Comments

One Response to “LSCC workshop: RNA-seq Analysis – A Hands-on Introduction”

  1. admin on October 25th, 2011 8:22 am

    Workshop notes and related files are available below

    Workshop Notes – https://www.vlsci.org.au/sites/default/files/RNA-Seq_workshop_handout.pdf

    Associated scripts – https://www.vlsci.org.au/sites/default/files/RNAseq_scripts.pdf

    xls file of differentially expressed genes – https://www.vlsci.org.au/sites/default/files/cuffdiff.xls

    You can dowload a .tar.gz file of all the tutorial files and results – http://static.vlsci.unimelb.edu.au/nathanh/RNAseq_tutorial.tar.gz

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