The purpose of this tutorial is to guide users from the raw FASTQ files produced by the sequencer to obtaining aligned short reads to human and non-human (pathogen) references in the sequence Alignment/Map (SAM) report format. In this tutorial we will consider Illumina single end reads although most of this tutorial applies to pair end reads as well.
20 days ago
STAble – a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow
August 6, 2018
May 9, 2018