htSeqTools – Quality Control, Visualization and Processing for High-Throughput Sequencing data

htSeqTools is a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists.

Availability: http://watson.nci.nih.gov/bioc_mirror/packages/2.9/bioc/html/htSeqTools.html

Contact: david.rossell@irbbarcelona.org

  • Planet E, Stephan-Otto Attolini C, Reina O, Flores O, Rossell D. (2011) htSeqTools: High-Throughput Sequencing Quality Control, Processing and Visualization in R. Bioinformatics [Epub ahead of print]. [abstract]