This is the High-Throughput Sequencing portal of the EPFL Bioinformatics and Biostatistcs core facility. We provide below links to a set of simple pipelines that will read raw sequencing data and provide a set of first-pass analyses using standard techniques that we have designed and tested. The raw files can either be uploaded from a third-party experiment or provided as references to the local Genomics Core Facilities databases. Outputs are linked to GDV for browsing and finer analysis.
RNA-Seq Analysis – http://htsstation.vital-it.ch/rnaseq/
RNA-Seq Tutorial – http://bbcf.epfl.ch/bbcflib/tutorial_rnaseq.html