New methods for quantifying differential expression with RNA-Seq

A Bayesian method of calling differential expression (BM-DE) from RNA-Seq data

Lee J, Ji Y, Liang S, Cai G, Müller P. (2011) On Differential Gene Expression Using RNA-Seq Data. Cancer Inform 10, 205-15, [abstract]

AVAILABILITY:  A public domain R package is available from http://odin.mdacc.tmc.edu/~ylji/BMDE/

Allele-specific gene expression by RNA-seq

Skelly DA, Johansson M, Madeoy J, Wakefield J, Akey JM. (2011)  A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data. Genome Research [Epub ahead of print]. [abstract]

Availability:  R code to implement the statistical model described is available at: http://akeylab.gs.washington.edu/downloads.shtml.

 

DEB: A web interface for RNA-seq digital gene expression analysis

Yao JQ, Yu F. (2011) DEB: A web interface for RNA-seq digital gene expression analysis. Bioinformation 7(1), 44-45. [abstract]

Availability: DEB is freely accessed at http://www.ijbcb.org/DEB/php/onlinetool.php

Scroll To Top