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Bioinformatician (m/f) (#CFBIO15)

3 days ago Leave a comment 123 Views

The Institute of Molecular Biology gGmbH (IMB) is a Centre of Excellence for Life Sciences funded by the Boehringer Ingelheim Foundation. IMB is located at the campus of the Johannes ...
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Postdoc Position: Bioinformatics of Long Noncoding RNA Functional Elements

November 8, 2018 Leave a comment 505 Views
Featured RNA-Seq Job – Research Assistant

October 1, 2018 Leave a comment 832 Views
Bioinformatician and Data Engineer

October 1, 2018 Leave a comment 847 Views
Postdoc in Bioinformatics

September 6, 2018 Leave a comment 879 Views

Industry News

Biostars RNA-Seq
SEQanswers - RNA Sequencing

Rna-Seq Pipeline

So, there're papers on designing an RNA-seq experiment, and normalizing the data (Bullard et. a [...]

Visualisation Of Alternative Splicing Events Using Rna-Seq Data

Hi, I am looking for tools that provide a nice graphical display of different alternative splicing e [...]

How Are Rna-Seq Transcripts Assigned?

I am looking at some RNA-seq data analyzed by cufflinks using standard conditions, and trying to det [...]

Tophat Time And Memory Requirement

Hi, Anyone has an idea of memory and time requirement for tophat 1.4.1 for 76 paired-end reads (~60M [...]

Rna-Seq Data Variant Calling

Has anyone tried calling variants from RNA-seq data and comparing those with WGS/Exome sequencing va [...]

Tutorial: Workshop - Analysis Of Next Generation Sequencing Data

Workshop - Analysis of Next Generation Sequencing Data (Programming for Evolutionary Biology 2012 ht [...]

Searching For A Simple Yet Powerful Workflow For Rna-Seq

Hi, I have to start working with RNA-Seq data and have worked previously with ChIP-Seq so I am famil [...]

Rna-Seq Data For Cd34+ Cells Or An Alternative Approach To Compare My Expression Set

Hi! I am looking for a RNA-seq data on CD34+ cells (human), to compare the expression of genes in my [...]

Distribution Of Isoform Length

Is there any paper that contains the distribution of isoform length in different organisms? Here I [...]

Building A Webpage For Accessing Rna-Seq Expression Data

Hello all, I would like to get some hints to go about this task. I'd like to design a webpage/s [...]

Tophat Error : Oserror: [Errno 2] No Such File Or Directory

Hi, I am running tophat and getting a lot of different errors, I could understand some of them, but [...]

Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]

Hola! I would like to write a quick tutorial on viewing your coverage/track/wiggle files using UCSC. [...]

Why Are There Many Rna-Seq Hits To Intronic Regions?

I am looking at RNA-seq data, which I have little experience in. I notice that for many genes, there [...]

Differential Rnaseq Expression Analysis Directly On Stanford'S Great?

Does anybody know if the tool GREAT from Stanford U. can be used for RNAseq differential expression [...]

De Novo Transcriptome And Comparative Genomics

Hello all, First time posting here. I am looking at doing some comparative genomics with a mammalian [...]

How To Get Equal Numbers Of Gene_Id And Exon_Id For Use In Newexoncountset Function For Dexseq

I'm trying to run DEXseq but am having trouble with the newExonCountSet function because my gen [...]

Is This Always The Case That The Wig/Bigwig/Bed Files Are Meant Only For Viewing Into Ucsc Browser?

Since I'm currently working with RNA-seq experiment data stored in wig/bigwig format. There are [...]

Strand-Specific Rna-Seq Data For Maqc Samples?

Hi, Is there publicly available strand-specific RNA-Seq data for the MAQC samples? It seems that the [...]

Publicly Available Strand-Specific Rna-Seq Data With Corresponding Rt-Pcr Data?

Hi, I'm wondering if there publicly available strand-specific RNA-Seq data with corresponding R [...]

Public Rnaseq/Dnaseq Data

Hi, I understand this might be a long shot, but : is anybody aware of a public dataset which contain [...]

which method for Ribo-seq liberary construction is better?

Hi, all I saw some methods for liberary construction of Ribo-seq, some recommend to use small RNA li [...]

Transcriptome construction

Hello all I wanted to ask that whether i can use both genome and transcriptome (generated using PacB [...]

Is Kallisto good for identifying non-coding RNA in a RNAseq data?

Hi I generated a co-expression map using Kallisto for aligning reads. However, after completing my a [...]

Very low TopHat aligment using public available dataset

Probably I'm missing something very simple, but I'm quiet new on this and maybe you can he [...]

Short survey for you bioinformatics struggles!

Hello everyone, I'm doing research on the* issues biologists without bioinformatics skills* fac [...]

Using Galaxy Trinity de novo assembly to look for predicted sequence

Hello all, I am very new to this kind of work and took the time to read through many wikis and metho [...]

RNA-seq data on single nucleotide level (time series data)

Hello, I want to work with multidimensional RNA-Seq dataset on single nucleotide level. anyone have [...]

Failure of tumor FFPE samples sequencing

Dear all, I am a PhD student in Belgium, Brussels, working on RNA sequencing of ~130 tumoral FFPE sa [...]

RNA modifications poster – Discover the chemical structure of different RNA modifications and their distribution and function in mRNA and tRNAs

July 17, 2018

Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion

March 21, 2018

RNA-Seq Blog Transcriptome Research & Industry News

RNA-SEQ NEWS

Jobs

Bioinformatician (m/f) (#CFBIO15)

Postdoc Position: Bioinformatics of Long Noncoding RNA Functional Elements

Featured RNA-Seq Job – Research Assistant

Bioinformatician and Data Engineer

Postdoc in Bioinformatics

Industry News

Almac Group Launches claraT – A Unique, Software-driven Gene Expression Report

BioLegend partners on TotalSeqTM antibodies to boost single cell surface protein profiling within VIB

Amaryllis Nucleics Adds Dual-Indexing Capabilities to its Dual-Mode RNAseq Kit

1CellBio and the Open Medicine Institute to Demonstrate Power of Single-Cell RNA Sequencing in Precision Medicine Applications

Advaita Bioinformatics has announced a new release of their advanced RNA-seq and gene expression analysis software, iPathwayGuide

Featured Presentations

MSI Tutorial – RNA Sequencing Analysis

Differential Splicing Analysis with RNA-Seq: Current Applications, Approaches, & Limitations

Bioconductor Workshop: RNA Seq and ChIP Seq Analysis

RNA modifications poster – Discover the chemical structure of different RNA modifications and their distribution and function in mRNA and tRNAs

Mastering RNA-Seq Data Analysis – A critical approach to transcriptomic data analysis

Single cell RNA sequencing and multiple myeloma

MaRS: 27,000 human RNA-Seq in one database

Single-Cell RNA-Seq and cell heterogeneity in the central nervous system

Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion

Single cell RNA sequencing and Multiple Myeloma

Transcriptome Analysis using RNA-Seq Data

The Iso-Seq method for transcriptome analysis and genome annotation

Quantifying index switching in single-cell transcriptome sequencing experiments

The unique genetic makeup of myeloma tumor cells revealed by single cell RNA-Seq

Bioinformatician (m/f) (#CFBIO15)

Advantages of single-nucleus over single-cell RNA sequencing of adult kidney

RNA Sequencing gives new insights into formation of neurons in mammalian adult brain

Analyzing single-cell landscapes

Single cell sequencing sheds light on why cancers form in specific cell types

Recovery and analysis of transcriptome subsets from pooled single-cell RNA-seq libraries