RNA-Seq – a big topic at next week's Plant & Animal Genomes Conference

Plant & Animal Genomes

  1. Identification of the Chromosomal Region Controlling Naringenin Chalcone Accumulation in Melon Rind by a Combination of RNA-Seq and Bulk Segregant Analysis

... W230 Identification of the Chromosomal Region Controlling Naringenin Chalcone Accumulation in Melon Rind by a Combination of RNA-Seq and Bulk Segregant Analysis Date: Sunday, January 13, 2013 Time: 3:50 PM Room: Pacific Salon 1 Ari Feder , Newe ...

  1. Tagging the Signature of Domestication in the Common Bean Using RNA-Seq Genotyping

... W461 Tagging the Signature of Domestication in the Common Bean Using RNA-Seq Genotyping Date: Sunday, January 13, 2013 Time: 8:00 AM Room: Pacific Salon 1 Eleonora Biagetti , Università Politecnica delle Marche, ...

  1. Update On NCBI’s Eukaryotic Genome Annotation Pipeline and Expansion To Process RNA-Seq Data

... W489 Update On NCBI’s Eukaryotic Genome Annotation Pipeline and Expansion To Process RNA-Seq Data Date: Tuesday, January 15, 2013 Time: 4:30 PM Room: Sunset Kim D. Pruitt , National Center for Biotechnology Information, ...

  1. The Ferret Genome or How RNAseq Data Helped the Annotation

... Trust Sanger Institute, Cambridge, United Kingdom With the emergence of transcriptome data generated by Next Generation Sequencing, large sets of RNA-Seq data have been made available alongside genome assemblies for many species including human, zebrafish, tilapia and ferret. These RNA-Seq data ...

  1. RNA-Seq Analysis and de novo Transcriptome Assembly of Coffea arabica and Coffea eugenioides

... P0068 RNA-Seq Analysis and de novo Transcriptome Assembly of Coffea arabica and Coffea eugenioides Date: Monday, January 14, 2013 Room: Grand Exhibit ...

  1. RNA-Seq Analysis and De Novo Transcriptome Assembly Of Coffea arabica and Coffea eugenioides

... W191 RNA-Seq Analysis and De Novo Transcriptome Assembly Of Coffea arabica and Coffea eugenioides Date: Sunday, January 13, 2013 Time: 4:50 PM ...

  1. Characterizing The Maize Transcriptome Using RNAseq

... Lansing, MI Maize has extensive genetic variation, including single nucleotide polymorphisms (SNPs), indels, presence-absence variants, and copy-number variants. We conducted RNA-seq on whole-seedling RNA from 503 maize inbreds, primarily of Midwestern origin, for the purposes of SNP discovery and genotyping, and ...

  1. RNA-Seq and Genome Sequencing of Lolium tenmulentum, a Relative of Perennial Ryegrass

... P0035 RNA-Seq and Genome Sequencing of Lolium tenmulentum, a Relative of Perennial Ryegrass Date: Monday, January 14, 2013 Room: Grand Exhibit Hall ...

  1. Transcriptome Analysis Using RNA-Seq for Rust Resistance in Switchgrass

... P0838 Transcriptome Analysis Using RNA-Seq for Rust Resistance in Switchgrass Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Desalegn Serba , The Samuel Roberts ...

  1. Whole Transcriptome Value Index (WTVI): A Methodology for Integrating Functional Sequences from RNA-Seq Data into Animal Selection

... P0890 Whole Transcriptome Value Index (WTVI): A Methodology for Integrating Functional Sequences from RNA-Seq Data into Animal Selection Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Mohammad Banabazi , Animal Science Research Institute, ...

  1. RNA-Seq Analysis of Stress Response in Rainbow Trout

... P0511 RNA-Seq Analysis of Stress Response in Rainbow Trout Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Sixin Liu , USDA ...

  1. RNA-Seq Analysis Of Stress Response In Rainbow Trout

... W042 RNA-Seq Analysis Of Stress Response In Rainbow Trout Date: Saturday, January 12, 2013 Time: 9:35 AM Room: Royal Palm Salons 3-4 ...

  1. An Innovative Solution to RNA-Seq Sample Prep From High Quality RNA

... P0022 An Innovative Solution to RNA-Seq Sample Prep From High Quality RNA Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Jim Pease , Epicentre, Madison, ...

  1. Host Genetics and Vaccine Efficacy: Global Gene Expression Differences Induced by Vaccine and MDV in MD Resistant and Susceptible Chickens Based on Next-Gen RNA-Seq Reads

... Vaccine Efficacy: Global Gene Expression Differences Induced by Vaccine and MDV in MD Resistant and Susceptible Chickens Based on Next-Gen RNA-Seq Reads Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Huanmin Zhang , USDA ARS Avian Disease & Oncology Laboratory, ...

  1. Host Genetics and Vaccine Efficacy: Global Gene Expression Differentiation Induced By Vaccine and MDV In MD Resistant and Susceptible Chickens Based On Next-Gen RNA-Seq Reads

... Vaccine Efficacy: Global Gene Expression Differentiation Induced By Vaccine and MDV In MD Resistant and Susceptible Chickens Based On Next-Gen RNA-Seq Reads Date: Sunday, January 13, 2013 Time: 9:40 AM Room: Sunset Huanmin Zhang , USDA ARS Avian Disease & Oncology ...

  1. RNA-Seq Identifies Genes and Processes that are Differentially Expressed in Soybean Due to Weed Stress

... P0339 RNA-Seq Identifies Genes and Processes that are Differentially Expressed in Soybean Due to Weed Stress Date: Monday, January 14, 2013 Room: ...

  1. Transcriptome Assembly and SNP Identification in Pongamia pinnata (L.) Pierre using RNA-seq

... P0485 Transcriptome Assembly and SNP Identification in Pongamia pinnata (L.) Pierre using RNA-seq Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Jill Wegrzyn , University of California, Davis, Davis, CA Carol Loopstra ...

  1. TrueSight-ES: Machine Learning Approach to Detecting Splice Junctions in RNA-Seq Data

... P1008 TrueSight-ES: Machine Learning Approach to Detecting Splice Junctions in RNA-Seq Data Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Paul D. Burns , Georgia Institute of Technology, Atlanta, GA ...

  1. Bovine Genome Database: Working Towards an Improved Bovine Gene Set Using Community-provided RNA-Seq Data

... P0959 Bovine Genome Database: Working Towards an Improved Bovine Gene Set Using Community-provided RNA-Seq Data Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Darren E. Hagen , Division of Animal Sciences, University of ...

  1. RNA-seq Reveals Differential Gene Expression in the Liver between Broiler Chickens with High and Low Feed Efficiencies

... P0647 RNA-seq Reveals Differential Gene Expression in the Liver between Broiler Chickens with High and Low Feed Efficiencies Date: Monday, January 14, ...

  1. RNA-seq Reveals Differential Gene Expression in the Liver Between Broiler Chickens with High and Low Feed Efficiencies

... W622 RNA-seq Reveals Differential Gene Expression in the Liver Between Broiler Chickens with High and Low Feed Efficiencies Date: Saturday, January 12, ...

  1. RNA-seq and Metabolite Profiling Reveal Novel Functions for the Polyphenol Oxidase Enzyme in Walnut (Juglans regia)

... P0884 RNA-seq and Metabolite Profiling Reveal Novel Functions for the Polyphenol Oxidase Enzyme in Walnut (Juglans regia) Date: Monday, January 14, 2013 ...

  1. An RNA-Seq Approach to Study Vernalization and the Induction of Flowering in Perennial Ryegrass

... P0033 An RNA-Seq Approach to Study Vernalization and the Induction of Flowering in Perennial Ryegrass Date: Monday, January 14, 2013 Room: Grand Exhibit ...

  1. An RNA-Seq Approach To Study Vernalization and The Induction Of Flowering In Perennial Ryegrass

... W407 An RNA-Seq Approach To Study Vernalization and The Induction Of Flowering In Perennial Ryegrass Date: Saturday, January 12, 2013 Time: 12:20 PM ...

  1. The Transition of From Endogenous Primary to Secondary siRNAs that Silence Soybean Chalcone Synthase is Revealed by Small RNA-Seq of Developing Seed Coats

... P0794 The Transition of From Endogenous Primary to Secondary siRNAs that Silence Soybean Chalcone Synthase is Revealed by Small RNA-Seq of Developing Seed Coats Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Young B Cho , University of Illinois, ...

  1. Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity

... P0102 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Sarah I. ...

  1. Using Plasmode Datasets to Compare Statistical Methods for RNA-seq Analysis

... P0988 Using Plasmode Datasets to Compare Statistical Methods for RNA-seq Analysis Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Pablo Daniel Reeb , Michigan State University, East Lansing, MI ...

  1. DNA Subway: Genomics, DNA Barcoding, and RNA-Seq – Bringing Cutting-Edge Biology into the Classroom

... DNA Subway: Genomics, DNA Barcoding, and RNA-Seq – Bringing Cutting-Edge Biology into the Classroom This workshop will introduce DNA Subway (dnasubway.iplantcollaborative.org), an education- oriented bioinformatics platform developed ...

  1. A Rapid End-to-End Workflow for Preparing rRNA-depleted and Directional Plant RNA-Seq Libraries

... P0026 A Rapid End-to-End Workflow for Preparing rRNA-depleted and Directional Plant RNA-Seq Libraries Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Roy Sooknanan , Epicentre (an Illumina® company), Madison, WI John ...

  1. CLASS and ASprofile: Resources for Alternative Splicing Annotation from RNA-seq Data

... P0987 CLASS and ASprofile: Resources for Alternative Splicing Annotation from RNA-seq Data Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Liliana Florea , Johns Hopkins University School of Medicine, Baltimore, ...

  1. RNA-Seq Approaches to the Study of Early Interactions Between Catfish and Flavobacterium columnare

... P0491 RNA-Seq Approaches to the Study of Early Interactions Between Catfish and Flavobacterium columnare Date: Monday, January 14, 2013 Room: Grand Exhibit ...

  1. RNA-Seq Approaches to the Study of Early Interactions Between Catfish and Flavobacterium columnare

... W052 RNA-Seq Approaches to the Study of Early Interactions Between Catfish and Flavobacterium columnare Date: Saturday, January 12, 2013 Time: 3:55 PM ...

  1. iPlant Collaborator: RNA-Seq Analysis in the Discovery Environment

... W449 iPlant Collaborator: RNA-Seq Analysis in the Discovery Environment Date: Tuesday, January 15, 2013 Time: 11:00 AM Room: California Richard Barker , UW Madison, ...

  1. iPlant Collaborator: RNAseq Analysis in the Discovery Environment

P0827 iPlant Collaborator: RNAseq Analysis in the Discovery Environment Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Richard Barker , UW Madison, Madison, WI Plant organs use gravity as a growth guide, a process called gravitropism. Accordingly, shoots grow

  1. DNASTAR Lasergene: An Integrated Package for de novo Transcriptome and RNA-Seq Analysis on a Desktop Computer

... P0962 DNASTAR Lasergene: An Integrated Package for de novo Transcriptome and RNA-Seq Analysis on a Desktop Computer Date: Monday, January 14, 2013 Room: Grand Exhibit Hall Matthew Keyser , DNASTAR, Inc., Madison, ...

  1. TrueSight: A New Algorithm For Splice Junction Detection Using RNA-Seq

... W208 TrueSight: A New Algorithm For Splice Junction Detection Using RNA-Seq Date: Tuesday, January 15, 2013 Time: 4:10 PM Room: Royal Palm Salon 1,2,3 Jian Ma , University of Illinois at ...

  1. Using QSeq for RNAseq Experiments in Testes from High and Low Sperm Mobility Lines

Using QSeq for RNAseq Experiments in Testes from High and Low Sperm Mobility Lines Date: Monday, January 14, 2013 Time: 6:50 PM Room: Royal Palm Salon 4,5,6 Douglas D. Rhoads , University of Arkansas, Fayetteville, AR Back to: DNASTAR <<

  1. Next-Gen Sequence Assembly and Analysis in Lasergene Genomics Suite: Population Genomics, SNP Analysis, RNA-Seq and More

... Next-Gen Sequence Assembly and Analysis in Lasergene Genomics Suite: Population Genomics, SNP Analysis, RNA-Seq and More Date: Monday, January 14, 2013 Time: 7:10 PM Room: Royal Palm Salon 4,5,6 Matthew Keyser , DNASTAR, Inc., ...

  1. Proteogenomics: Gene discovery using Mass Spectrometry and accumulative RNA-seq data

... W789 Proteogenomics: Gene discovery using Mass Spectrometry and accumulative RNA-seq data Date: Tuesday, January 15, 2013 Time: 3:50 PM Room: Royal Palm Salon 1,2,3 Sunghee Woo , UCSD, San Diego, ...

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