RNA-Seq a big topic at upcoming ASHG 2012

ASHG 2012

Abstract/Presentation Information

Title: Quantitative trait locus analysis for next-generation sequencing with the functional linear models.(20) (11:30AM-11:45AM on Wed) (Platform)
Author(s): M. Xiong, L. Luo, Y. Zhu
Keywords: Statistical Genetics and Genetic Epidemiology, KW059 – family linkage analysis, KW073 – genetic epidemiology, KW080 – genome-wide association, KW079 – genome sequencing, KW083 – genotype-phenotype correlations

Title: Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq data.(39) (11:45AM-12:00NOON on Wed) (Platform)
Author(s): E. Eskin, E. Kang, B. Han, A. J. Lusis, L. Martin, S. Shiffman
Keywords: Bioinformatics and Genomic Technology, KW008 – bioinformatics, KW151 – regulation of transcription, KW169 – transcription

Title: RNA-Seq identifies differentially expressed genes and mutations in oligodendrogliomas.(1236W) (3:15PM-4:15PM on Wed) (Poster)
Author(s): E. Schrock, K. Szafranski, J. A. Campos Valenzuela, S. Schauer, D. Krex, A. Rump, K. Hackmann, G. Schackert, L. Kaderali, M. Platzer, B. Klink
Keywords: Cancer Genetics, KW011 – brain/nervous system, KW012 – cancer, KW079 – genome sequencing, KW126 – oncogenesis

Title: Widespread novel RNA editing in human brain tissue, identified by RNA-Seq.(2622W) (3:15PM-4:15PM on Wed) (Poster)
Author(s): L. Hou, N. Akula, J. Wendland, D. T. Chen, X. Jiang, K. Choi, B. K. Lipska, J. E. Kleinman, F. J. McMahon
Keywords: Psychiatric Genetics, Neurogenetics and Neurodegeneration, KW155 – RNA, KW102 – massively parallel sequencing, KW134 – phenotype

Title: Transcriptome sequencing of nPOD type 1 diabetes pancreatic samples for viral sequence identification.(3600W) (3:15PM-4:15PM on Wed) (Poster)
Author(s): S. Morfopoulou, G. Zhao, R. Ferreira, A. Pugliese, J. Petrosino, L. Thackray, V. Plagnol, nPOD-Virus group
Keywords: Bioinformatics and Genomic Technology, KW031 – computational tools, KW041 – diabetes, KW087 – immune system, KW089 – infectious disease

Title: Rapid and Efficient Methods for Preparing Globin- and rRNA-Depleted Directional RNA-Seq Libraries.(3668W) (3:15PM-4:15PM on Wed) (Poster)
Author(s): C. Kinross, J. Hitchen, N. Caruccio, R. Sooknanan
Keywords: Bioinformatics and Genomic Technology, KW155 – RNA, KW081 – genomic methodologies, KW079 – genome sequencing

Title: RNA-seq uncovers the influence of structural variants on transcriptome diversity.(3674W) (3:15PM-4:15PM on Wed) (Poster)
Author(s): E. Ait Yahya Graison, A. Reymond
Keywords: Bioinformatics and Genomic Technology, KW034 – copy number/structural variation, KW155 – RNA, KW004 – alternative splicing, KW102 – massively parallel sequencing, KW113 – model organisms

Title: Selective sequencing of mature transcripts in the human brain by cytoplasmic RNA-Seq.(3728W) (3:15PM-4:15PM on Wed) (Poster)
Author(s): A. Zaghlool, A. Ameur, J. Halvardson, L. Cavelier, L. Feuk
Keywords: Bioinformatics and Genomic Technology, KW155 – RNA, KW079 – genome sequencing, KW004 – alternative splicing

Title: The ENCODE effort combining RNA-seq and RT-PCR-seq allows to catalog thousands of novel lncRNAs.(506W) (3:15PM-4:15PM on Wed) (Poster)
Author(s): C. Howald, A. Tanzer, J. Chrast, F. Kokocinski, T. Derrien, N. Walters, J. Manuel Gonzalez, A. Frankish, B. L. Aken, T. Hourlier, J. Vogel, S. White, S. M. J. Searle, J. Harrow, T. Hubbard, R. Guigò, A. Reymond
Keywords: Genome structure, variation and function, KW004 – alternative splicing, KW155 – RNA, KW068 – gene localization, KW082 – genomic structure, KW125 – noncoding RNA

Title: Comparative analysis of strand-specific RNA sequencing approaches.(512W) (3:15PM-4:15PM on Wed) (Poster)
Author(s): D. Munafo, P. Liu, C. Sumner, L. Apone, B. Langhorst, E. Yigit, L. Merrill, F. Stewart, E. Dimalanta, T. Davis
Keywords: Genome structure, variation and function, KW044 – digital gene expression, KW111 – micro RNA, KW125 – noncoding RNA, KW155 – RNA, KW169 – transcription

Title: Transcriptome genomic analysis using RNA-seq in three tissues of a twin cohort.(546W) (3:15PM-4:15PM on Wed) (Poster)
Author(s): A. Buil, A. Brown, M. Davies, A. Viñuela, M. Gallardo, D. Glass, M. Blasco, R. Durbin, T. D. Spector, E. T. Dermitzakis for the EUROBATS Consortium
Keywords: Genome structure, variation and function, KW004 – alternative splicing, KW044 – digital gene expression, KW151 – regulation of transcription, KW155 – RNA

Title: “Seq-ing” the Myotonic Dystrophy Transcriptome.(Sess. 24) (09:40AM-10:00AM on Thu) (Invited Scientific)
Presenter(s): E. Wang

Title: A Study of Asthma Pharmacogenomics Using RNA-Seq.(638T) (3:15PM-4:15PM on Thu) (Poster)
Author(s): B. E. Himes, R. Hu, P. Wagner, D. Chan, B. Klanderman, R. A. Panettieri Jr., K. Tantisira, S. T. Weiss, Q. Lu
Keywords: Pharmacogenetics, KW130 – pharmacodynamics, KW131 – pharmacogenetics, KW153 – respiratory system, KW155 – RNA

Title: Massively-parallel sequencing of the brain transcriptome reveals differential expression of novel genes in bipolar disorder.(260) (08:15AM-08:30AM on Fri) (Platform)
Author(s): N. Akula, J. Barb, X. Jiang, J. Wendland, K. Choi, S. Sen, B. K. Lipska, J. E. Kleinman, H. C. Bravo, D. T. Chen, P. J. Munson, F. J. McMahon
Keywords: Psychiatric Genetics, Neurogenetics and Neurodegeneration, KW004 – alternative splicing, KW011 – brain/nervous system, KW155 – RNA, KW008 – bioinformatics, KW169 – transcription

Title: Discovery of genomic variants from RNA-sequencing data.(289) (08:45AM-09:00AM on Fri) (Platform)
Author(s): R. Piskol, G. Ramaswami, J. B. Li
Keywords: Bioinformatics and Genomic Technology, KW159 – SNP analysis/discovery, KW155 – RNA, KW169 – transcription, KW008 – bioinformatics, KW102 – massively parallel sequencing

Title: Multivariate profiling approach to inference on differential expression in RNA-Seq data with small sample size.(3567F) (2:15PM-3:15PM on Fri) (Poster)
Author(s): S. Oh, M. Kim, S. Song
Keywords: Bioinformatics and Genomic Technology, KW008 – bioinformatics, KW031 – computational tools, KW044 – digital gene expression, KW071 – genes in development, KW081 – genomic methodologies

Title: Golden Helix GenomeBrowse: Cloud-enabled visual analytics of DNA and RNA-Seq NGS data.(3579F) (2:15PM-3:15PM on Fri) (Poster)
Author(s): G. Rudy, S. Gardner, M. Thiesen
Keywords: Bioinformatics and Genomic Technology, KW008 – bioinformatics, KW031 – computational tools, KW079 – genome sequencing, KW155 – RNA, KW159 – SNP analysis/discovery

Title: Identification of human RNA editing sites using publically available RNA-sequencing data.(543F) (2:15PM-3:15PM on Fri) (Poster)
Author(s): G. Ramaswami, J. B. Li
Keywords: Genome structure, variation and function, KW155 – RNA, KW011 – brain/nervous system, KW008 – bioinformatics

Title: The genetics of gene expression, splicing and transcriptional efficiency through Poly-A selection and ribosomal depletion RNA sequencing in humans.(547F) (2:15PM-3:15PM on Fri) (Poster)
Author(s): M. Pala, M. Marongiu, A. Mulas, R. Cusano, F. Crobu, F. Reinier, R. Berutti, M. G. Piras, C. Joens, D. Schlessinger, G. Abecasis, A. Angius, S. Sanna, F. Cucca, S. B. Montgomery
Keywords: Genome structure, variation and function, KW004 – alternative splicing, KW151 – regulation of transcription, KW102 – massively parallel sequencing, KW140 – population genetics, KW155 – RNA

Title: Functional RNA Editing Sites Identified by Comparative Transcriptome Analysis.(577F) (2:15PM-3:15PM on Fri) (Poster)
Author(s): R. Zhang, G. Ramaswami, L. P. Keegan, T. Deng, M. A. O’Connell, J. B. Li
Keywords: Bioinformatics and Genomic Technology, KW008 – bioinformatics, KW056 – evolution, KW078 – genome scan, KW155 – RNA, KW124 – nervous system

Title: Whole transcriptome analysis of Velocardiofacial Syndrome (VCFS) using next-generation sequencing.(579F) (2:15PM-3:15PM on Fri) (Poster)
Author(s): Y. Zhang, J. Jin, X. Zhu, M. Haney, Y. Kluger, S. Weissman, A. Urban
Keywords: Genome structure, variation and function, KW034 – copy number/structural variation, KW102 – massively parallel sequencing, KW079 – genome sequencing, KW151 – regulation of transcription

Title: The Gamma Method for gene set analysis of RNA-Seq data: Simulation results and application to a smallpox vaccine study.(1426F) (3:15PM-4:15PM on Fri) (Poster)
Author(s): B. L. Fridley, G. D. Jenkins, D. E. Grill, J. M. Biernacka, R. B. Kennedy, G. A. Poland, A. L. Oberg
Keywords: Statistical Genetics and Genetic Epidemiology, KW155 – RNA, KW008 – bioinformatics, KW031 – computational tools, KW079 – genome sequencing, KW087 – immune system

Title: Constructing biological network using RNA-seq data.(1504F) (3:15PM-4:15PM on Fri) (Poster)
Author(s): Y. Choi, M. Coram, H. Tang
Keywords: Statistical Genetics and Genetic Epidemiology, KW105 – mathematical modeling, KW155 – RNA

Title: RNA-SEQ survey of human lymphoid and myeloid cells – a resource for identifying causal genes in validated immune-mediated disease loci.(1982F) (3:15PM-4:15PM on Fri) (Poster)
Author(s): S. Foisy, C. Beauchamp, A. Alikashani, F. Latour, M. Ladouceur, S. Lessage, J. D. Rioux
Keywords: Complex Traits and Polygenic Disorders, KW008 – bioinformatics, KW031 – computational tools, KW044 – digital gene expression, KW102 – massively parallel sequencing, KW155 – RNA

Title: Analysis of Whole Transcriptome specific to the Temporal Pole of Late-Onset Alzheimer’s disease.(341) (04:45PM-05:00PM on Fri) (Platform)
Author(s): C. E. Humphries, M. A. Kohli, P. W. Whitehead, W. F. Hulme, L. Nathanson, D. C. Mash, M. A. Pericak-Vance, J. R. Gilbert
Keywords: Complex Traits and Polygenic Disorders, KW011 – brain/nervous system, KW123 – neurogenetics, KW125 – noncoding RNA, KW122 – neurodegeneration, KW004 – alternative splicing