Sashimi-plot – a utility for producing plots for RNA-Seq analyses of isoform expression

Sashimi-plot is a utility for automatically producing publication-quality plots for RNA-Seq analyses of isoform expression. It is part of the MISO framework. In particular, sashimi-plot can: (1) plot raw RNA-Seq densities along exons and junctions for multiple samples, while simultaneously visualizing the gene model/isoforms to which reads map, and (2) plot MISO output alongside the raw data or separately.

Sashimi-plot

Katz Y, Wang ET, Airoldi EM, Burge CB. (2010) Analysis and design of RNA sequencing experiments for identifying isoform regulation. Nature Methods 7, 1009-1015. [abstract]

Scroll To Top