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RNA stability is an important determinant of eventual transcript levels

RNA stability is an important determinant of eventual transcript levels

Histone epigenome data determined by chromatin immunoprecipitation sequencing (ChIP-seq) is used in identifying transcript regions and estimating expression levels. However, this estimation does not always correlate with eventual RNA expression levels measured by RNA sequencing (RNA-seq). Part of the inconsistency ...

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ChIP-RNA-seq

ChIP-RNA-seq

Intro Biostatistics and Bioinformatics, lec 23 ChIP-seq and RNA-seq presented by Stuart Brown

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piPipes – a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing

piPipes – a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing

PIWI-interacting RNAs (piRNAs), 23-36 nt small silencing RNAs, repress transposon expression in the metazoan germ line, thereby protecting the genome. Although high-throughput sequencing has made it possible to examine the genome and transcriptome at unprecedented resolution, extracting useful information from ...

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Omics Pipe – A Computational Framework for Reproducible Multi-Omics Data Analysis

Omics Pipe – A Computational Framework for Reproducible Multi-Omics Data Analysis

Omics Pipe is a computational framework for reproducible multi-omics data analysis that supports several next generation sequencing best practice pipelines, such as RNA-seq, miRNA-seq, Exome-seq, whole genome-seq and ChIP-seq. The purpose of Omics Pipe is to provide researchers with an ...

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