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www.rnaseq.wiki

www.rnaseq.wiki

Massively parallel RNA sequencing (RNA-seq) has rapidly become the assay of choice for interrogating RNA transcript abundance and diversity. This article provides a detailed introduction to fundamental RNA-seq molecular biology and informatics concepts. The authors make available open-access RNA-seq tutorials ...

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New microRNA Analysis App in BaseSpace

New microRNA Analysis App in BaseSpace

miRNAs are a class of non-coding RNAs mainly involved in post-transcription control of gene expression although they are also involved in other non-canonical functions. Furthermore, they represents an interesting class of biomarkers for a large variety of diseases. Small RNA-sequencing ...

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Massive computing contest won with RNA-Seq data analysis

Massive computing contest won with RNA-Seq data analysis

The winner of the Big Science Challenge, a contest convened last year by Cycle Computing to provide $10,000 in cloud computing resources for groundbreaking biomedical research, has successfully completed the first phase of its project while logging more than 115 ...

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FX: an RNA-Seq analysis tool on the cloud

FX is an RNA-Seq analysis tool, which runs in parallel on cloud computing infrastructure, for the estimation of gene expression levels and genomic variant calling. In the mapping of short RNA-Seq reads, FX uses a transcriptome-based reference primarily, generated from ...

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Cloud Based Solutions – a Trend for RNA-Seq Data Analysis

Cloud Based Solutions – a Trend for RNA-Seq Data Analysis

RNA-Seq is becoming the tool of choice for gene expression studies, as it can facilitate the investigation of phenomena beyond the reach of traditional microarrays, such as novel transcripts and isoforms, alternative splice sites, and allele-specific expression. However, this increased power ...

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