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Benchmarking RNA-Seq quantification tools

RNA-Seq, a deep sequencing technique, promises to be a potential successor to microarrays for studying the transcriptome. One of many aspects of transcriptomics that are of interest to researchers is gene expression estimation. With rapid development in RNA-Seq, there are ...

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Cuffdiff update for differential expression analysis of RNA-Seq data

Differential analysis of gene and transcript expression using high-throughput RNA sequencing (RNA-seq) is complicated by several sources of measurement variability and poses numerous statistical challenges. A team led by researchers at the University of California Berkeley has released and update ...

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LSCC workshop: RNA-seq Analysis – A Hands-on Introduction

Monday, October 17, 2011 – 9:30am – 1:00pm VLSCI Boardroom Topics covered: Mapping RNA-seq data using tophat and bowtie, Analyzing and comparing transcripts using cufflinks, Visualising data using IGV. You will need to bring your own laptop (Macs and linux ...

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RNA-Seq Web Resources

Technical Guides RNA-Seq Technical Guide – From Genomeweb. A panel of experts answer questions regarding RNA-Seq experiments. Discussion Forums The RNA-Seq Blog – A discussion forum for all things transcriptomic. SEQanswers – The next-generation sequencing community – threads tagged with ...

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