Tag Archives: RNA-Seq

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Transcriptome Sequencing of the HIV-1Tg Rat Brain

The noninfectious HIV-1 transgenic (HIV-1Tg) rat was developed as a model of AIDs-related pathology and immune dysfunction by manipulation of a noninfectious HIV-1gag-pol virus with a deleted 3-kb SphI-MscI fragment containing the 3′ -region of gag and the 5′ region ...

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The Queryable RNA Seq Database

The Queryable RNA Seq Database

The purpose of the system is to automate and simplify as much as possible the process of analyzing RNA-Seq results data by storing it in a database and providing many options for querying it. Goals Goal 1: Provide a system ...

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Querying the Cancer Transcriptome

from Genetic Engineering News by Richard A. Stein, M.D., Ph.D. The complex and dynamic transcriptional patterns unveiled by the ENCyclopedia of DNA Elements (ENCODE) project, together with the finding that less than 2% of the transcriptional output of the human ...

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EDGE-pro – Estimated Degree of Gene Expression in PROkaryots

The expression levels of bacterial genes can be measured directly using next-generation sequencing (NGS) methods, offering much greater sensitivity and accuracy than earlier, microarray-based methods. Most bioinformatics software for estimating levels of gene expression from NGS data has been designed ...

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Differential expression analysis for paired RNA-seq data

RNA-Seq technology measures the transcript abundance by generating sequence reads and counting their frequencies across different biological conditions. To identify differentially expressed genes between two conditions, it is important to consider the experimental design as well as the distributional property ...

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Early Registration Closing Friday – RNA-Seq 2013

Early Registration Closing Friday – RNA-Seq 2013

You have until this Friday 29th March to register for RNA-Seq 2013 (18-20 June, Boston) at the best possible rates. RNA-Seq 2013 brings together the latest knowledge and success stories for applying RNA-Seq technology in drug discovery and development. The agenda is ...

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