Tag Archives: RNA-Seq

MIRPIPE – quantification of microRNAs in niche model organisms

rna-seq

MicroRNAs represent an important class of small non-coding RNAs regulating gene expression in eukaryotes. Present algorithms typically rely on genomic data to identify miRNAs and require extensive installation procedures. Niche model organisms lacking genomic sequences cannot be analyzed by such ...

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Introduction to RNA-Seq and its Applications to Drug Discovery and Development

rna-seq

The research and development (R&D) process in modern drug discovery and development is a challenging task. One of the reasons is because the biological system is complex. There are 20,000–25,000 genes in the human genome. Using traditional test methods such ...

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Qlucore Omics Explorer Makes RNA-Seq Analysis Simple

rna-seq

RNA-seq data can now be analyzed just as easily as microarray data In recent years, transcriptomic profiling via next generation sequencing (RNA-seq) has emerged as both a technical and cost-effective alternative to arrays. Qlucore Omics Explorer 3.0 supports direct import ...

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Omics Pipe – A Computational Framework for Reproducible Multi-Omics Data Analysis

rna-seq

Omics Pipe is a computational framework for reproducible multi-omics data analysis that supports several next generation sequencing best practice pipelines, such as RNA-seq, miRNA-seq, Exome-seq, whole genome-seq and ChIP-seq. The purpose of Omics Pipe is to provide researchers with an ...

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Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing

rna-seq

Long non-coding RNA (lncRNA) have proven to play key roles in cell physiology from nuclear organization and epigenetic remodeling to post-transcriptional regulation. Last decade, gene expression based-classifications have been developed in clear-cell renal cell carcinoma (ccRCC) to identify distinct subtypes ...

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New England Biolabs® Introduces New Ribosomal RNA Depletion Technology from Genomic Health .

rna-seq

IPSWICH, Mass., Aug. 19, 2014 /PRNewswire/ — New England Biolabs, Inc. (NEB®) today announced that NEB has exclusively in-licensed rights from Genomic Health, Inc. to its technology for the depletion of abundant RNAs, which is instrumental to performing sensitive RNA-seq experiments ...

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Alignment Algorithms For RNA-Seq

rna-seq

Alignment Algorithms For RNA-Seq by Asa Thibodeau – University of Connecticut – School of Engineering

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READemption – A tool for the computational analysis of deep-sequencing-based transcriptome data

rna-seq

RNA-Seq has become a potent and widely used method to qualitatively and quantitatively study transcriptomes. In order to draw biological conclusions based on RNA-Seq data, several steps some of which are computationally intensive, have to be taken. Researchers at the ...

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SLaP Mapper: a webserver for identifying and quantifying spliced-leader addition and polyadenylation site usage

rna-seq

The Kinetoplastida are a diverse and globally distributed class of free-living and parasitic single-celled eukaryotes that collectively cause a significant burden on human health and welfare. In kinetoplastids individual genes do not have promoters, but rather all genes are arranged ...

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