Tag Archives: rna structure

RNA structure from deep sequencing

rna-seq

from Nature Biotechnology by Eric Westhof Solving the three-dimensional structure of an RNA molecule means laborious study by X-ray crystallography or nuclear magnetic resonance spectroscopy. However, faster complementary methods are on the horizon, many involving deep sequencing and sophisticated computational ...

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Finding RNA Thermometers with Next-Gen Sequencing

Temperature is one of the decisive signals that a mammalian pathogen has entered its warm-blooded host. Among the many ways to register temperature changes, bacteria often use temperature-modulated structures in the untranslated region of mRNAs. In this article, the authors ...

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RNA-Seq and RNA Structure Prediction

rna-seq

by Xiaole Shirley Liu RNA-seq Experiments Analysis: read mapping, expression index, isoform inference, differential expression RNA structure prediction Covariance model Base-pair maximization Free energy method

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