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The GATK Best Practices for variant calling on RNAseq

The GATK Best Practices for variant calling on RNAseq

by Geraldine_VdAuwera at GATK Best Practices workflow for RNAseq This workflow is intended to be run per-sample; joint calling on RNAseq is not supported yet, though that is on our roadmap. Please see the new document here for full details ...

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NGS QC and RNA-seq

Presented by Sara Grimm Abstract: This module will cover QC of NGS data and analysis of RNAseq data. Some basic aspects of NGS quality control of raw sequencing data will be discussed, focusing on common problems to look for and ...

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Cuffdiff update for differential expression analysis of RNA-Seq data

Differential analysis of gene and transcript expression using high-throughput RNA sequencing (RNA-seq) is complicated by several sources of measurement variability and poses numerous statistical challenges. A team led by researchers at the University of California Berkeley has released and update ...

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