Tag Archives: transcriptome assembly

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Bayesembler – bayesian transcriptome assembly

Bayesembler – bayesian transcriptome assembly

RNA-seq allows for simultaneous transcript discovery and quantification, but reconstructing complete transcripts from such data remains difficult. Here, researchers from the University of Copenhagen introduce the Bayesembler, a novel probabilistic method for transcriptome assembly built on a Bayesian model of ...

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Tutorial – Intermediate RNA-Seq: Tips, Tricks and Non-Human Organisms

Tutorial – Intermediate RNA-Seq: Tips, Tricks and Non-Human Organisms

Minnesota Supercomputing Institute Date: Thursday, September 25, 2014, 01:00 pm – 03:00 pm Location: Room 105 Cargill Building This lecture will go over more advanced RNA-Seq topics and compliments Basics of RNA-seq. Lecture Topics: Non-mammal specific RNA-Seq issues Transcriptome assembly ...

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Upcoming Webinar – The Hows and Whys of RNA-Seq

Upcoming Webinar – The Hows and Whys of RNA-Seq

Date: Thursday, May 22nd Time: 11AM PST · 2PM EST Duration: 45 minutes Title: The Hows and Whys of RNA-Seq Whether you’re a seasoned researcher or a transcriptomics newbie, an in-depth look at the complexities of RNA-seq analysis can be ...

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RNA-seq analysis 3 day workshop

RNA-seq analysis 3 day workshop

Next date: 24.03.2014 – 26.03.2014. Location: Oslo, Norway This introductory level course is focused on experimental design, differential expression analysis and transcriptome assembly using R/Bioconductor and open-source tools. Hands-on analysis exercises will be based on real world data – bring ...

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Assessment of transcript reconstruction methods for RNA-seq

Assessment of transcript reconstruction methods for RNA-seq

Researchers at the European Molecular Biology Laboratory evaluated 25 protocol variants of 14 independent computational methods for exon identification, transcript reconstruction and expression-level quantification from RNA-seq data. Their  results show that most algorithms are able to identify discrete transcript components ...

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