Tag Archives: transcriptome assembly

Alternative transcriptome assembly tools improve proteomics informed by transcriptomics (PIT) workflow

rna-seq

RNA sequencing is a powerful method to build reference transcriptome assemblies and eventually sample-specific protein databases for mass spectrometry-based analyses. This novel proteomics informed by transcriptomics (PIT) workflow improves sample-specific proteome characterization of dynamic- and especially non-model organism proteomes, and ...

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SATRAP – SOLiD Assembler TRAnslation Program

rna-seq

SOLiD DNA sequences are typically analyzed using a reference genome, while they are not recommended for de novo assembly of genomes or transcriptomes. This is mainly due to the difficulty in translating the SOLiD color-space data into normal base-space sequences. ...

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