Tag Archives: transcriptome assembly

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CLASS – Splice Variant Annotation from RNA-Seq Reads

CLASS – Splice Variant Annotation from RNA-Seq Reads

Next generation sequencing of cellular RNA is making it possible to characterize genes and alternative splicing in unprecedented detail. However, designing bioinformatics tools to capture splicing variation accurately has proven difficult. Current programs find major isoforms of a gene but ...

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Bayesembler – bayesian transcriptome assembly

Bayesembler – bayesian transcriptome assembly

RNA-seq allows for simultaneous transcript discovery and quantification, but reconstructing complete transcripts from such data remains difficult. Here, researchers from the University of Copenhagen introduce the Bayesembler, a novel probabilistic method for transcriptome assembly built on a Bayesian model of ...

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Tutorial – Intermediate RNA-Seq: Tips, Tricks and Non-Human Organisms

Tutorial – Intermediate RNA-Seq: Tips, Tricks and Non-Human Organisms

Minnesota Supercomputing Institute Date: Thursday, September 25, 2014, 01:00 pm – 03:00 pm Location: Room 105 Cargill Building This lecture will go over more advanced RNA-Seq topics and compliments Basics of RNA-seq. Lecture Topics: Non-mammal specific RNA-Seq issues Transcriptome assembly ...

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Upcoming Webinar – The Hows and Whys of RNA-Seq

Upcoming Webinar – The Hows and Whys of RNA-Seq

Date: Thursday, May 22nd Time: 11AM PST · 2PM EST Duration: 45 minutes Title: The Hows and Whys of RNA-Seq Whether you’re a seasoned researcher or a transcriptomics newbie, an in-depth look at the complexities of RNA-seq analysis can be ...

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RNA-seq analysis 3 day workshop

RNA-seq analysis 3 day workshop

Next date: 24.03.2014 – 26.03.2014. Location: Oslo, Norway This introductory level course is focused on experimental design, differential expression analysis and transcriptome assembly using R/Bioconductor and open-source tools. Hands-on analysis exercises will be based on real world data – bring ...

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