Tag Archives: transcriptome

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Stranded Whole Transcriptome RNA-Seq for All RNA Types

Stranded Whole Transcriptome RNA-Seq for All RNA Types

Stranded whole transcriptome RNA-Seq described in this unit captures quantitative expression data for all types of RNA including, but not limited to, miRNA (microRNA), piRNA (Piwi-interacting RNA), snoRNA (small nucleolar RNA), lincRNA (large non-coding intergenic RNA), SRP RNA (signal recognition ...

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REDItools – Uncovering RNA Editing Sites in Long Non-Coding RNAs

REDItools – Uncovering RNA Editing Sites in Long Non-Coding RNAs

RNA editing is an important co/post-transcriptional molecular process able to modify RNAs by nucleotide insertions/deletions or substitutions. In human, the most common RNA editing event involves the deamination of adenosine (A) into inosine (I) through the adenosine deaminase acting on ...

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AtCAST3.0 Update – A web-based tool for analysis of transcriptome data by searching similarities in gene expression profiles

AtCAST3.0 Update – A web-based tool for analysis of transcriptome data by searching similarities in gene expression profiles

In transcriptome experiments, the experimental conditions (e.g., mutants and/or treatments) cause transcriptional changes. Identifying experimental conditions that induce similar or opposite transcriptional changes can be used to identify experimental conditions that affect the same biological process. AtCAST is a web-based ...

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Microarray Not Fade Away

Microarray Not Fade Away

Yes, many are attracted to next-generation sequencing, but loyalty to chip-based phenotyping has its rewards, particularly in screens of large sample sets. from Genetic Engineering News – by Lisa Heiden The microarray, the legacy technology for measuring gene expression, will ...

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Enabling large-scale next-generation sequence assembly with Blacklight

Enabling large-scale next-generation sequence assembly with Blacklight

A variety of extremely challenging biological sequence analyses were conducted on the XSEDE large shared memory resource Blacklight, using current bioinformatics tools and encompassing a wide range of scientific applications. These include genomic sequence assembly, very large metagenomic sequence assembly, ...

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A defining decade in DNA (and RNA) sequencing

A defining decade in DNA (and RNA) sequencing

from Nature Methods The past decade has seen a transformation, fueled by the availability of NGS platforms, in applications based on generating DNA and RNA sequence. There are more than 50 multiletter-acronym or ‘MLA-seq’ applications for interrogating a wide variety ...

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Featured RNA-Seq Job – Systems Biology Specialist

Featured RNA-Seq Job – Systems Biology Specialist

IBM (Yorktown Heights, NY) Job ID – RES-0675782 Job type – Full-time Complementary Business group – IBM Research Job description A Postdoctoral position in Systems Biology is available at the IBM Translational Systems Biology Group, to work at both the ...

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