Tag Archives: transcriptomics

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Proteomics Informed by Transcriptomics

Proteomics Informed by Transcriptomics

With the recent advent of RNA-seq technology the proteomics community has begun to generate sample-specific protein databases for peptide and protein identification, an approach we call proteomics informed by transcriptomics (PIT). This approach has gained a lot of interest, particularly ...

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The Plant Genome Integrative Explorer Resource – PlantGenIE.org

The Plant Genome Integrative Explorer Resource – PlantGenIE.org

Accessing and exploring large-scale genomics data sets remains a significant challenge to researchers without specialist bioinformatics training. A team led by researchers at Umeå University, Sweden have developed the integrated PlantGenIE.org platform for exploration of Populus, conifer and Arabidopsis genomics data, ...

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Putting transcriptomics in its place

Putting transcriptomics in its place

from Nature Reviews Genetics by Darren J. Burgess A recent focus of transcriptomics is to supplement gene expression data with spatial information on cellular or tissue context in order to obtain a greater understanding of physiological gene regulatory processes. A ...

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Using REDItools to Detect RNA Editing Events in NGS Datasets

Using REDItools to Detect RNA Editing Events in NGS Datasets

RNA editing is a post-transcriptional/co-transcriptional molecular phenomenon whereby a genetic message is modified from the corresponding DNA template by means of substitutions, insertions, and/or deletions. It occurs in a variety of organisms and different cellular locations through evolutionally and biochemically ...

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