End-to-End Solutions Planned to Support Key Customer Applications With Increased Cost Flexibility on Long-Read Sequencing Systems PacBio a leading developer of high-quality, highly accurate sequencing solutions, today announced the commencement of a program intended to expand Multiplexed Arrays Sequencing (MAS-Seq) ...
Read More »Search Results for: 16s
RNA-Seq Equally as Sensitive as 16S Metagenomics for Detection of Bacterial Pathogens
Rodents are major reservoirs of pathogens responsible for numerous zoonotic diseases in humans and livestock. Assessing their microbial diversity at both the individual and population level is crucial for monitoring endemic infections and revealing microbial association patterns within reservoirs. Recently, ...
Read More »CATCh – an ensemble classifier for chimera detection in 16S rRNA sequencing studies
In ecological studies microbial diversity is nowadays mostly assessed via the detection of phylogenetic marker genes such as 16S ribosomal RNA. However, PCR amplification of these marker genes produces a significant amount of artificial sequences often referred to as chimeras. ...
Read More »ALDEx2 – characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
Experimental designs that take advantage of high-throughput sequencing to generate datasets include RNA sequencing (RNA-seq), chromatin immunoprecipitation sequencing (ChIP-seq), sequencing of 16S rRNA gene fragments, metagenomic analysis and selective growth experiments. In each case the underlying data are similar and ...
Read More »Analysis of Microbial Communities from 16S rRNA Sequencing
Dr. Christopher Taylor, Assistant Professor, Department of Computer Science, University of New Orleans.
Read More »ReÂsponse to inÂfecÂtion therÂapy betÂter unÂderÂstood thanks to a new sequencing techÂnique
A sequencing-based solution can be utilised to determine infection clearance and microbiota recovery. Next, the researchers will apply the technique to investigate the coronavirus disease. Infectious diseases are caused by pathogenic viruses, bacteria, fungi or parasites. The treatment of bacterial ...
Read More »EMBR-seq – Enrichment of mRNA by blocked rRNA for bacterial RNA sequencing
RNA sequencing is a powerful approach to quantify the genome-wide distribution of mRNA molecules in a population to gain deeper understanding of cellular functions and phenotypes. However, unlike eukaryotic cells, mRNA sequencing of bacterial samples is...
Read More »New RiboCop rRNA Depletion Kit for monocultures and mixed bacterial samples
RNA extracted from bacterial species comprises up to 98 % of ribosomal RNAs (rRNA), preventing the in-depth analysis of RNAs of interest, particularly in the context of Next Generation Sequencing (RNA-Seq). Moreover, depletion of rRNA derived from multi-species bacterial communities ...
Read More »QIAGEN launched new QIAseq FastSelect™ solutions to accelerate RNA-seq
Hilden, Germany, and Germantown, Maryland, November 12, 2019 – Last month QIAGEN announced the launch of innovative new technologies for faster, simpler library preparation for next-generation sequencing (NGS) in the growing field of RNA research. Ribonucleic acid (RNA) controls many ...
Read More »New RNA sequencing strategy provides insight into microbiomes
Tools allow scientists to understand the activity of naturally occurring microbiomes in response to real-world conditions and diet Researchers from the University of Chicago have developed a...
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