Search Results for: edger

edgeRun – an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact test

rna-seq

Next-generation sequencing platforms for measuring digital expression such as RNA-Seq are displacing traditional microarray-based methods in biological experiments. The detection of differentially expressed genes between groups of biological conditions has led to the development of numerous bioinformatics tools, but so ...

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shRNA-seq data analysis with edgeR

rna-seq

Pooled short hairpin RNA sequencing (shRNA-seq) screens are becoming increasingly popular in functional genomics research, and there is a need to establish optimal analysis tools to handle such data. This open-source shRNA processing pipeline in edgeR provides a complete analysis ...

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