Analysis Pipelines

aRNApipe – A balanced, efficient and distributed pipeline for processing RNA-seq data in high performance computing environments


The wide range of RNA-seq applications and their high computational needs require the development of pipelines orchestrating the entire workflow and optimizing usage of available computational resources. Researchers at the HudsonAlpha Institute for Biotechnology have developed aRNApipe, a project-oriented pipeline ...

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SCell – integrated analysis of single-cell RNA-seq data

Analysis of the composition of heterogeneous tissue has been greatly enabled by recent developments in single-cell transcriptomics. Researchers from UCSF have developed SCell, an integrated software tool for quality filtering, normalization, feature selection, iterative dimensionality reduction, clustering and the estimation ...

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