RNA-Seq Blog Transcriptome Research & Industry News
Current bioinformatics workflows for PIWI-interacting RNA (piRNA) analysis focus primarily on germline-derived piRNAs and piRNA-clusters...
Read More »WIND (Workflow for pIRNAs aNd beyonD): a strategy for in-depth analysis of small RNA-seq data
Navigating the unCHARTed – web tool explores public sequencing data for cancer research
Tumor heterogeneity—the complex microenvironment of different cell subpopulations within a single tumor—remains a major challenge...
Read More »BARseq2 – maps neuronal projections paths and gene expression simultaneously
Functional circuits consist of neurons with diverse axonal projections and gene expression. Understanding the molecular signature of...
Read More »Omics Playground online: a user-friendly tool for the rapid analysis of omics data
BigOmics Analytics has launched the web-based version of the Omics Playground, an extremely user-friendly platform that allows non-coders to analyse RNA-Seq, scRNA-seq, microarray and proteomics data types. Through it users can perform basic analysis, including sample clustering, pairwise...
Read More »SCENA – Consensus clustering of single-cell RNA-seq data by enhancing network affinity
Elucidation of cell subpopulations at high resolution is a key and challenging goal of single-cell ribonucleic acid (RNA) sequencing (scRNA-seq)...
Read More »Integration of millions of transcriptomes using batch-aware triplet neural networks
Efficient integration of heterogeneous and increasingly large single-cell RNA sequencing data poses a major challenge for analysis and, in...
Read More »SuperFreq – detecting copy number alterations in RNA-Seq using
Calling copy number alterations (CNAs) from RNA sequencing (RNA-Seq) is challenging, because of the marked variability in coverage across genes and...
Read More »TIMEOR- a web-based tool to uncover temporal regulatory mechanisms from multi-omics data
Uncovering how transcription factors regulate their targets at DNA, RNA and protein levels over time is critical to define gene regulatory networks (GRNs)...
Read More »pyrpipe – a Python package for RNA-Seq workflows
The availability of terabytes of RNA-Seq data and continuous emergence of new analysis tools, enable unprecedented biological insight. There is a pressing requirement for a framework that allows for fast, efficient, manageable, and reproducible RNA-Seq analysis. Iowa State University researchers ...
Read More »CellMap – characterizing the types and composition of iPSC-derived cells from RNA-seq data
Induced pluripotent stem cell (iPSC) derived cell types are increasingly employed as in vitro model systems for drug discovery. For these studies to...
Read More »