RNA-Seq Blog Transcriptome Research & Industry News
The function of many noncoding RNAs (ncRNAs) depend upon their secondary structures. Over the last decades, several methodologies have been...
Read More »StructRNAfinder – an automated pipeline and web server for RNA families prediction
viscRNA-Seq (virus-inclusive single cell RNA-Seq) – probing host transcriptome together with intracellular viral RNA at the single cell level
Dengue and Zika viral infections affect millions of people annually and can be complicated by hemorrhage or neurological manifestations, respectively. However, a thorough understanding of the host response to these viruses is lacking...
Read More »NetMiner – an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples
Accurately reconstructing gene co-expression network is of great importance for uncovering the genetic architecture underlying complex and various phenotypes. The recent availability of high-throughput RNA-seq sequencing has made genome-wide...
Read More »Octopus-toolkit – a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data
The Octopus-toolkit, a stand-alone application for retrieving and processing large sets of next-generation sequencing (NGS) data with a single step Octopus-toolkit is an automated set...
Read More »miRPursuit – a pipeline for automated analyses of small RNAs in model and nonmodel plants
Researchers from the Institute of Experimental Biology and Technology, Portugal introduce miRPursuit, a pipeline developed for running end-to-end analyses of high-throughput small RNA...
Read More »A RNA-Sequencing approach for the identification of novel long non-coding RNA biomarkers in colorectal cancer
Long non-coding RNAs (lncRNAs) have been implicated in human pathology, however, their role in colorectal carcinogenesis have not been fully elucidated. In the current study, researchers from Baylor...
Read More »myTAI – Evolutionary Transcriptomics with R
Next Generation Sequencing (NGS) technologies generate a large amount of high quality transcriptome datasets enabling the investigation of molecular processes on a genomic and...
Read More »UClncR – Ultrafast and comprehensive long non-coding RNA detection from RNA-seq
Long non-coding RNA (lncRNA) is a large class of gene transcripts with regulatory functions discovered in recent years. Many more are expected to be...
Read More »piRNA analysis from small RNA-Seq data
With the increasing number of studies focusing on PIWI-interacting RNA (piRNAs), it is now pertinent to develop efficient tools dedicated towards piRNA analysis. Researchers at the National Institute of...
Read More »Granatum – the user-friendly web tool for single cell RNA sequencing analysis
Single-cell RNA sequencing (scRNA-seq) is a frontier research area that studies genomic events down to the individual cell level, providing unprecedented insights into many biological and medical questions, such as cancer heterogeneity and tumor...
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