RNA-Seq Blog Transcriptome Research & Industry News
Version3.0 is now available for download !! Download CSBB-v3.0 from GitHub or Source Forge : GitHub : https://github.com/csbbcompbio/CSBB-v3.0 Source Forge: https://sourceforge.net/projects/csbb-v3-0/?source=navbar Major Highlights of version 3.0: *RNA-Seq processing for human, mouse, frog and zebrafish *ChIP-Seq processing for human, mouse and frog *ATAC-Seq ...
Read More »BALDR – a computational pipeline for paired heavy and light chain immunoglobulin reconstruction in single-cell RNA-seq data
B cells play a critical role in the immune response by producing antibodies, which display remarkable diversity. Here researchers from the Yerkes National Primate Research Centerdescribe a bioinformatic...
Read More »StructRNAfinder – an automated pipeline and web server for RNA families prediction
The function of many noncoding RNAs (ncRNAs) depend upon their secondary structures. Over the last decades, several methodologies have been...
Read More »viscRNA-Seq (virus-inclusive single cell RNA-Seq) – probing host transcriptome together with intracellular viral RNA at the single cell level
Dengue and Zika viral infections affect millions of people annually and can be complicated by hemorrhage or neurological manifestations, respectively. However, a thorough understanding of the host response to these viruses is lacking...
Read More »NetMiner – an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples
Accurately reconstructing gene co-expression network is of great importance for uncovering the genetic architecture underlying complex and various phenotypes. The recent availability of high-throughput RNA-seq sequencing has made genome-wide...
Read More »Octopus-toolkit – a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data
The Octopus-toolkit, a stand-alone application for retrieving and processing large sets of next-generation sequencing (NGS) data with a single step Octopus-toolkit is an automated set...
Read More »miRPursuit – a pipeline for automated analyses of small RNAs in model and nonmodel plants
Researchers from the Institute of Experimental Biology and Technology, Portugal introduce miRPursuit, a pipeline developed for running end-to-end analyses of high-throughput small RNA...
Read More »A RNA-Sequencing approach for the identification of novel long non-coding RNA biomarkers in colorectal cancer
Long non-coding RNAs (lncRNAs) have been implicated in human pathology, however, their role in colorectal carcinogenesis have not been fully elucidated. In the current study, researchers from Baylor...
Read More »myTAI – Evolutionary Transcriptomics with R
Next Generation Sequencing (NGS) technologies generate a large amount of high quality transcriptome datasets enabling the investigation of molecular processes on a genomic and...
Read More »UClncR – Ultrafast and comprehensive long non-coding RNA detection from RNA-seq
Long non-coding RNA (lncRNA) is a large class of gene transcripts with regulatory functions discovered in recent years. Many more are expected to be...
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