Shandong University researchers have developed DeepBIO, the first-of-its-kind automated and interpretable deep-learning platform for high-throughput biological sequence functional analysis. DeepBIO is a one-stop-shop web service that enables...
Read More »CF-Seq – rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies
Researchers studying cystic fibrosis (CF) pathogens have produced numerous RNA-seq datasets which are available in the gene expression omnibus (GEO).
Read More »GEOexplorer – a webserver for gene expression analysis and visualisation
Gene Expression Omnibus (GEO) is a database repository hosting a substantial proportion of publicly available high throughput gene expression data. Gene expression analysis is a powerful tool to gain insight into the mechanisms and processes...
Read More »The complete sequence of a human genome
Since its initial release in 2000, the human reference genome has covered only the euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. Addressing the remaining 8%...
Read More »SeqCVIBE – interactive analysis, exploration, and visualization of RNA-Seq data
The rise of modern gene expression profiling techniques, such as RNA-Seq, has generated a wealth of high-quality datasets spanning all fields...
Read More »CellDepot – A Unified Repository for scRNA-seq Data and Visual Exploration
CellDepot containing over 270 datasets from 8 species and many tissues serves as an integrated web application to empower scientists in exploring single-cell RNA-seq (scRNA-seq) datasets and comparing the datasets among various studies through a user-friendly interface with advanced visualization ...
Read More »Dashboard-style interactive plots for RNA-seq analysis are R Markdown ready with Glimma 2.0
Glimma 1.0 introduced intuitive, point-and-click interactive graphics for differential gene expression analysis. Researchers at the Walter and Eliza Hall Institute of Medical Research present a major update to Glimma that brings improved interactivity and...
Read More »Slinker – visualising novel splicing events in RNA-Seq data
Visualisation of the transcriptome relative to a reference genome is fraught with sparsity. This is due to RNA sequencing (RNA-Seq) reads being predominantly mapped to exons that account for...
Read More »RNA-Scoop – interactive visualization of transcripts in single-cell transcriptomes
Recent advances in single-cell RNA sequencing technologies have made detection of transcripts in single cells possible. The level of resolution...
Read More »SCHNAPPs – Single Cell sHiNy APPlication(s)
Single-cell RNA-sequencing (scRNAseq) experiments are becoming a standard tool for bench-scientists to explore the cellular diversity present in all tissues. Data produced by scRNAseq is technically complex...
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