Data Visualization

RNAbrowse: RNA-Seq De Novo Assembly Results Browser

rna-seq

Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. ...

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RNASeqGUI: A GUI for analysing RNA-Seq data

RNA-seq

Researchers from the Istituto per le Applicazoni del Calcolo, CNR, Italy, have developed RNASeqGUI R package, a graphical user interface (GUI) for the identification of differentially expressed genes across multiple biological conditions. This R package includes some well known RNA-Seq ...

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ReadXplorer – Visualization and Analysis of Mapped Sequences

rna-seq

Fast algorithms and well-arranged visualizations are required for the comprehensive analysis of the ever-growing size of genomic and transcriptomic next generation sequencing (NGS) data. ReadXplorer is a software offering straightforward visualization and extensive analysis functions for genomic and transcriptomic DNA ...

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TraV: A Genome Context Sensitive Transcriptome Browser

rna-seq

Next-generation sequencing (NGS) technologies like Illumina and ABI Solid enable the investigation of transcriptional activities of genomes. While read mapping tools have been continually improved to enable the processing of the increasing number of reads generated by NGS technologies, analysis ...

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New bioinformatics tool to visualize transcriptomes

rna-seq

ZENBU, a new, freely available bioinformatics tool developed at the RIKEN Center for Life Science Technology in Japan, enables researchers to quickly and easily integrate, visualize and compare large amounts of genomic information resulting from large-scale, next-generation sequencing experiments. Next-generation ...

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bwtool: A tool for bigWig files

rna-seq

BigWig files are a compressed, indexed, binary format for genome-wide signal data for calculations (e.g. GC percent) or experiments (e.g. ChIP-seq/RNA-seq read depth). bwtool is a tool designed to read bigWig files rapidly and efficiently, providing functionality for extracting data ...

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