ChiloDB is an integrated resource that will be of use to the rice stem borer research community. The rice striped stem borer (SSB), Chilo suppressalis Walker, is a major rice pest that causes severe yield losses in most rice-producing countries. ...
Read More »A novel multi-alignment pipeline for high-throughput sequencing data
Mapping reads to a reference sequence is a common step when analyzing allele effects in high-throughput sequencing data. The choice of reference is critical because its effect on quantitative sequence analysis is non-negligible. Recent studies suggest aligning to a single ...
Read More »dbCerEx: A Web-Based Database for the Analysis of Cervical Cancer Transcriptomes
Cervical cancers are ranked the second-most hazardous ailments among women worldwide. In the past two decades, microarray technologies have been applied to study genes involved in malignancy progress. However, in most of the published microarray studies, only a few genes ...
Read More »Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs
Small RNAs are pivotal regulators of gene expression that guide transcriptional and post-transcriptional silencing mechanisms in eukaryotes, including plants. Here a team led by researchers at the Center for Research and Advanced Studies of the National Polytechnic Institute, Mexico report ...
Read More »SFGD: a comprehensive platform for mining functional information from soybean transcriptome data
Soybean (Glycine max L.) is one of the world’s most important leguminous crops producing high-quality protein and oil. Increasing the relative oil concentration in soybean seeds is many researchers’ goal, but a complete analysis platform of functional annotation for the ...
Read More »BambooGDB: a bamboo genome database with functional annotation and an analysis platform
Bamboo, as one of the most important non-timber forest products and fastest-growing plants in the world, represents the only major lineage of grasses that is native to forests. Recent success on the first high-quality draft genome sequence of moso bamboo ...
Read More »ALE-HSA21 – AnaLysis of Expression on human chromosome 21
Transcriptome studies have shown the pervasive nature of transcription, demonstrating almost all the genes undergo alternative splicing. Accurately annotating all transcripts of a gene is crucial. It is needed to understand the impact of mutations on phenotypes, to shed light ...
Read More »The MOuse NOnCode Lung database
The MOuse NOnCode Lung database: mouse long non-coding RNAs (lncRNA) involved in Influenza and SARS-CoV infections The MOuse NOnCode Lung database — MONOCLdb — is an integrative and interactive database designed to retrieve and visualize annotations, expression profiles and functional ...
Read More »Citrus sinensis Annotation Project (CAP): A Comprehensive Database for Sweet Orange Genome
Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit ...
Read More »glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing data
Genomic datasets and the tools to analyze them have proliferated at an astonishing rate. However, such tools are often poorly integrated with each other: each program typically produces its own custom output in a variety of non-standard file formats. Here ...
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