Other Tools

INsPeCT: INtegrative Platform for Cancer Transcriptomics

rna-seq

The emergence of transcriptomics, fuelled by high-throughput sequencing technologies, has changed the nature of cancer research and resulted in a massive accumulation of data. Computational analysis, integration, and data visualization are now major bottlenecks in cancer biology and translational research. ...

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Optimal Bayesian Classification Tutorial

rna-seq

An overview of the SAMCNet package (available at https://github.com/binarybana/samcnet) that implements optimal Bayesian classification for RNA-Seq data as part of an upcoming publication. (Publication details will follow once reviewed and accepted)

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bwtool: A tool for bigWig files

rna-seq

BigWig files are a compressed, indexed, binary format for genome-wide signal data for calculations (e.g. GC percent) or experiments (e.g. ChIP-seq/RNA-seq read depth). bwtool is a tool designed to read bigWig files rapidly and efficiently, providing functionality for extracting data ...

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