Interest in studying the spatial distribution of gene expression in tissues is rapidly increasing. Spatial Transcriptomics is a novel sequencing-based technology that generates high-throughput...
Read More »Optimization of small RNA library preparation protocol from human urinary exosomes
Sequencing of miRNAs isolated from exosomes has great potential to identify novel disease biomarkers, but exosomes have low amount of RNA, hindering...
Read More »Efficient depletion of ribosomal RNA for RNA sequencing in planarians
The astounding regenerative abilities of planarian flatworms prompt steadily growing interest in examining their molecular foundation. Planarian regeneration was found to require hundreds of genes and is hence a complex process. Thus, RNA...
Read More »TM3’Seq: a tagmentation-mediated 3′ sequencing approach for improving scalability of RNA-Seq experiments
RNA-seq has become the standard tool for collecting genome-wide expression data in diverse fields, from quantitative genetics and medical genomics to ecology and developmental biology. However, RNA-seq...
Read More »Species independent rRNA removal
In most organisms, ribosomal RNA (rRNA) contributes to >85% of total RNA. Thus, to obtain useful information from RNA-sequencing (RNA-seq) analyses at reasonable sequencing depth, typically, mature polyadenylated transcripts are enriched or rRNA molecules are depleted. Targeted depletion of rRNA ...
Read More »New: Zymo-Seq RiboFree™ Total RNA Library Prep Kit
Zymo Research announces early access to the first total RNA-Seq library prep kit with fully-integrated universal rRNA depletion. Total RNA-Seq analysis enables researchers to analyze differential expression, novel transcripts, splicing and isoforms, SNP expression, and gene fusion and other mutation ...
Read More »MULTI-seq – sample multiplexing for single-cell RNA sequencing using lipid-tagged indices
Sample multiplexing facilitates scRNA-seq by reducing costs and identifying artifacts such as cell doublets. However, universal and scalable sample barcoding strategies have not been described. Researchers from UCSF have developed MULTI-seq: multiplexing using lipid-tagged indices for single-cell and single-nucleus RNA ...
Read More »A novel isothermal method using rolling circle reverse transcription for accurate amplification of small RNA sequences
RNA amplification has extensive applications on biochemistry and its related fields. Here, researchers at the Shaanxi Normal University present an isothermal strategy named rolling circle reverse transcription...
Read More »Multiplexed single-cell RNA-seq via transient barcoding
The development of high-throughput single-cell RNA sequencing (scRNA-seq) has enabled access to information about gene expression in individual cells and insights into new biological areas. Although the interest in scRNA-seq has rapidly grown in recent...
Read More »Evaluating and correcting inherent bias of microRNA expression in Illumina sequencing analysis
microRNA (miRNA) expression profiles based on the highly powerful Illumina sequencing technology rely on the construction of cDNA libraries in which adaptor ligation is known to deeply favor some miRNAs over others. This introduces erroneous...
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