Spatial transcriptomics is useful for understanding the molecular organization of a tissue and providing insights into cellular function in a morphological...
Read More »Electrical lysis and RNA extraction from single cells for RNA sequencing
Researchers from the RIKEN Cluster for Pioneering Research have developed a microfluidic method for electrical lysis and RNA extraction from single fixed cells leveraging reversible cross-linker dithiobis(succinimidyl propionate) (DSP). The microfluidic system...
Read More »Evaluation of serum extracellular vesicle isolation methods for profiling miRNAs by next-generation sequencing
Extracellular vesicles (EVs) are intercellular communicators with key functions in physiological and pathological processes and have recently garnered interest because of their diagnostic and...
Read More »Optimizing exosomal RNA isolation for RNA-Seq analyses of archival sera specimens
Exosomes are endosome-derived membrane vesicles that contain proteins, lipids, and nucleic acids. The exosomal transcriptome mediates intercellular communication, and represents an understudied reservoir of novel biomarkers for human diseases...
Read More »A practical solution for preserving single cells for RNA sequencing
The design and implementation of single-cell experiments is often limited by their requirement for fresh starting material...
Read More »RPAD – High-purity isolation of circular RNA
High-throughput RNA sequencing methods coupled with specialized bioinformatic analyses have recently uncovered tens of thousands of unique circular (circ)RNAs, but their complete sequences, genes of origin and functions are largely unknown. Given that circRNAs lack free ends and are thus ...
Read More »Improved RNA extraction from neurons
Efficient isolation of specific, intact, living neurons from the adult brain is problematic due to the complex nature of the extracellular matrix consolidating the neuronal network. Here, researchers from the RIKEN Institute present significant improvements to the protocol for isolation ...
Read More »A novel method for RNA extraction from FFPE samples reveals significant differences in biomarker expression
Next-generation sequencing (NGS) can identify and validate new biomarkers of cancer onset, progression and therapy resistance. Substantial archives of formalin-fixed, paraffin-embedded (FFPE) cancer samples from patients represent a rich resource for linking molecular signatures to clinical data. However, performing NGS ...
Read More »Differential amplicons (ΔAmp) – a new molecular method to assess RNA integrity
Integrity of the mRNA in clinical samples has major impact on the quality of measured expression levels. This is independent of the measurement technique being next generation sequencing (NGS), Quantitative real-time PCR (qPCR) or microarray profiling. If mRNA is highly ...
Read More »Somagenics Awarded Second NIH Grant to Develop resQ-RNA™ Technology to Quantify Fragmented mRNA From Degraded Samples
SANTA CRUZ, Calif. /PRNewswire/ — Somagenics has been awarded a second phase I SBIR grant from NIH to develop its resQ-RNATM technology for quantitative real-time PCR of fragmented RNA samples. Fragmentation of RNA is a particular problem in tissue samples that ...
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