UCLA scientists and colleagues have created a first-of-its-kind roadmap that traces each step in the development of blood stem cells in the human embryo, providing scientists with a blueprint for producing...
Read More »Complex biological questions being addressed using single cell sequencing technologies
Biologists have long desired to understand multi-cellular processes at the resolution of the single cell. Tremendous efforts have been made over more...
Read More »SPOROS- a pipeline to analyze DISE/6mer seed toxicity
microRNAs (miRNAs) are (18-22nt long) noncoding short (s)RNAs that suppress gene expression by targeting the 3′ untranslated region of target mRNAs. This occurs through the seed sequence...
Read More »Long-read RNA isoform sequencing identifies transcriptional traffic cop
Centromeres are curious structures. These specially organized chromosomal regions are best known for their unique and critical role in cell division, in which they are well understood to serve as the sites at...
Read More »Single cell RNA sequencing identifies 16 distinct cell populations in brain region responsible for substance abuse
In a work of systematic biology that advances the field, University of Alabama at Birmingham researchers have identified 16 distinct cell populations in a complex area of the midbrain called...
Read More »Spatial maps of melanoma reveal how individual cells interact as cancer progresses
Melanoma is a somewhat unusual cancer—one that blooms before our very eyes, often on sun-exposed skin, and can quickly become deadly as it turns our...
Read More »RashX – classification of previously clinicopathologically indeterminate rash samples using single-cell immune profiling
Inflammatory conditions represent the largest class of chronic skin disease, but the molecular dysregulation underlying many individual cases remains unclear. Single-cell RNA sequencing (scRNA-seq)...
Read More »Single cell RNA sequencing identifies an immunotherapy target to combat glioblastomas
Houston Methodist researchers have identified the genetic and molecular fingerprints of different cancer and immune cells in glioblastoma, the deadliest and...
Read More »Integrating readout of somatic mutations in individual cells with single-cell transcriptional profiling
In many biological applications, the readout of somatic mutations in individual cells is essential. For example, it can be used to mark individual cancer...
Read More »MarcoPolo – discover differentially expressed genes in single-cell RNA-seq data without depending on prior clustering
The standard analysis pipeline for single-cell RNA-seq data consists of sequential steps initiated by clustering the cells. An innate limitation of this pipeline is that an imperfect clustering result can irreversibly affect the succeeding steps. For example, there can be ...
Read More »