Presentations

RNA-Seq and RNA Structure Prediction

rna-seq

by Xiaole Shirley Liu RNA-seq Experiments Analysis: read mapping, expression index, isoform inference, differential expression RNA structure prediction Covariance model Base-pair maximization Free energy method

Read More »

Randomized Adapters for Reducing Bias in Small RNA-Seq Libraries

rna-seq

The past decade has seen an explosion of interest in cataloging the small RNA repertoires of animal and plant species, and in understanding the biological function of small RNAs. Small RNAs include not only microRNAs, but also piRNAs and other ...

Read More »

Studying the Transcriptome with Next Generation Sequencing

rna-seq

Next-Generation Sequencing is enabling scientists to study the transcriptome in ways never before possible. During this session with Illumina Distinguished Scientist, Dr. Gary Schroth, you will learn how a variety of RNA-Seq methods can be used to profile subsets of ...

Read More »

Alignment Algorithms For RNA-Seq

rna-seq

Alignment Algorithms For RNA-Seq by Asa Thibodeau – University of Connecticut – School of Engineering

Read More »

Leveraging a Cray Supercomputer for Parallel De novo Transcriptome assembly using Trinity

rna-seq

The Trinity RNA-Seq de novo assembly software has become a popular application for reconstructing transcriptomes from RNA-Seq in the realms of diverse model and non-model organisms. Trinity involves several software modules (Inchworm, Chrysalis, and Butterfly) that operate in sequence, with ...

Read More »