MiRQuery – a user-friendly web app for the interactive analysis and visualization of microRNA sequencing data
MicroRNAs, or miRNAs, are small RNA molecules that help control how genes are expressed. Rather than coding for proteins themselves, miRNAs can bind to messenger RNAs, or mRNAs, and reduce the amount of protein those messages produce. Because a ...
SCSEQ – A web tool for analyzing single-cell RNA-seq data
Single-cell RNA sequencing helps researchers study gene activity one cell at a time. This makes it possible to uncover differences between cells that may look similar under a microscope but behave very differently in development, disease, cancer, or immune ...
CytoAnalyst web platform facilitates comprehensive single cell RNA sequencing analysis
Studying individual cells is one of the most powerful ways scientists are learning about how life works on the smallest scale. Single-cell technologies, especially single-cell RNA sequencing, let researchers explore how different cells express genes, respond to their environment, ...
DiscMycoVir – a user-friendly platform for discovering mycoviruses in fungal transcriptomes
A team led by researchers from the University of Patras in Greece have developed an accessible new tool that simplifies the discovery of viruses in fungi using RNA sequencing data. Led by first author Alexandros Bompotas, the team created ...
CORESH – a gene signature-based search engine for public gene expression datasets
Public databases like the Gene Expression Omnibus (GEO) hold enormous amounts of gene expression data from past experiments—hundreds of thousands, in fact. But until recently, finding relevant data in these repositories was like searching for a needle in a ...
HPC-T-Assembly – a pipeline for de novo transcriptome assembly of large multi-specie datasets
In the past decade, RNA sequencing (RNA-seq) has revolutionized how researchers study gene expression, helping us understand how genes are turned on or off in different tissues, conditions, or species. But for many plants, animals, and microorganisms that haven’t ...
Crafted experiments to evaluate feature selection methods for single-cell RNA-seq data
Researchers at the University of North Carolina at Chapel Hill have developed a novel strategy called crafted experiments to improve the evaluation of single-cell RNA sequencing (scRNA-seq) analysis methods. While many computational tools exist for processing scRNA-seq data, comparing ...
The INTERVAL RNA-seq Portal
New RNA-Seq resource helps bridge the gap between identifying genetic changes linked to health conditions and understanding how these changes impact biological processes. Large-scale research has mapped how thousands of inherited genetic variants play a role in developing chronic ...
Interactive exploration of multimodal sequencing in major depressive disorder
What is this project? This project is a web application, developed by Anjali Chawla and Malosree Maitra from the labs of Dr. Turecki and Dr. Nagy, for the interactive visualization of ATAC and single-cell RNA sequencing data. This project was supported by the inaugural competition ...
Genomic Testing Cooperative unveils “GTC Interpret,” a groundbreaking web-based platform for partner labs to access analyzed sequencing data and finalize reports
Genomic Testing Cooperative (GTC), a leader in advanced genomic testing, announced the launch of GTC Interpret, a new web-based platform designed to provide Co-Op member laboratories and partner labs seamless online access to fully analyze genomic data with sophisticated reporting ...
RNA-Seq Products & Services
Most Shared Posts
- Upcoming Conference – The Festival of Genomics & Biodata
- Gene trajectory inference for single-cell data by optimal transport metrics
- Upcoming Workshop – Advanced Topics in Single Cell RNA-Seq Analysis: Multiomics ATAC-Seq & RNA-Seq
- BAP-seq – bioorthogonal masked acylating agents for proximity-dependent RNA labelling
- Single-cell RNA-seq of the rare virosphere reveals the native hosts of giant viruses in the marine environment
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