compcodeR is an R package for benchmarking of differential expression analysis methods, in particular methods developed for analyzing RNA-seq data. The package provides functionality for simulating realistic RNA-seq count data sets, an interface to several of the most commonly used differential expression analysis methods and extensive functionality for evaluating and comparing different approaches on real and simulated data.
AVAILABILITY: compcodeR is available from http://bcf.isb-sib.ch/data/compcodeR
CONTACT: Charlotte.Soneson@isb-sib.ch.
[box type=”shadow” align=”alignleft” ]Soneson C. (2014) compcodeR – an R package for benchmarking differential expression methods for RNA-seq data. Bioinformatics [Epub ahead of print]. [abstract][/fusion_text][/fusion_builder_column_inner][/fusion_builder_row_inner][/fusion_builder_column]Related Posts
compcodeR is an R package for benchmarking of differential expression analysis methods, in particular methods developed for analyzing RNA-seq data. The package provides functionality for simulating realistic RNA-seq count data sets, an interface to several of the most commonly used differential expression analysis methods and extensive functionality for evaluating and comparing different approaches on real and simulated data.
AVAILABILITY: compcodeR is available from http://bcf.isb-sib.ch/data/compcodeR
CONTACT: Charlotte.Soneson@isb-sib.ch.
[box type=”shadow” align=”alignleft” ]Soneson C. (2014) compcodeR – an R package for benchmarking differential expression methods for RNA-seq data. Bioinformatics [Epub ahead of print]. [abstract][/fusion_text][/fusion_builder_column_inner][/fusion_builder_row_inner][/fusion_builder_column]Related Posts
Recent Posts
Avoiding a sticky situation: how cells stop messenger RNAs from clumping together
New AI approaches to help understand complex biological data
Short-read RNA-seq yields lower estimates of A-to-I RNA editing levels than long-read cDNA sequencing
Single Cell Discoveries Acquires TATAA Biocenter to Create an End-to-End Precision Biology CRO
qMAP reveals RNA fragmentation patterns linked to development and disease
Urine microRNAs may help distinguish bacterial from viral infections in children
RNA-Seq Products & Services
Stay Connected