Schematic diagram for Glimma 2.0
Input data structures from limma, edgeR and DESeq2 RNA-seq analysis workflows are shown on the left, connected to the Glimma functions that accept them. New features for the MDS and summary-expression plots (MA, volcano and XY) are shown in the centre, demarcated by plus signs. Function outputs are listed on the right with several new output formats shown.
Availability – The stable version of the software is released on Bioconductor and is available at https://bioconductor.org/packages/release/bioc/html/Glimma.html. Both stable and developmental releases of Glimma are available on GitHub at https://github.com/hasaru-k/GlimmaV2.