The surprising finding could help scientists develop better treatments for depression

Doctors use ketamine on patients as general anesthesia before surgery. They also prescribe it in low doses for pain management, and more recently, it’s been used for treatment-resistant depression where other drugs have failed. It works by dampening communication between brain cells. But a new study reveals that its effects on the brain are different in male and female mice. This insight—if reproduced in humans—could change the way we test the efficacy of drugs and unlock better treatments for depression.

Researchers at the Institute of Science and Technology Austria, in collaboration with scientists at the Allen Institute, discovered that when female mice are recovering from a single ketamine sedation, their brains become much more active than their male counterparts, specifically their microglia. These specialized brain cells began reaching out with their branch-like arms to intermingle with surrounding brain cells. This increased activity led to the removal of the extracellular matrix—the proteins and molecules surrounding, supporting, and giving structure to cells—and created space that allowed new synapses to form and remodel the neural network, thereby increasing neuroplasticity. Researchers didn’t observe this behavior in male mice.

Microglia up-regulate the stress mediator Fkbp5/Fkbp51

rna-seq

(A) Experimental strategy for single-nuclei multiome sequencing. Primary visual cortex (VISp) of female mice microdissected 2 hours after saline or KXA treatment. (B) Uniform Manifold Approximation and Projection (UMAP) visualization of single-nucleus transcriptomes and cell type assignment. (C) Log fold change (LFC) estimates from KXA treatment on nonneuronal (astrocytes and microglia) versus neuronal cell types. Size and yellow intensity of points are proportional to the log10(P value) from ANOVA for interaction between ketamine effect and astrocytes/microglia cell type (see Materials and Methods). Error bars: 90% confidence intervals inferred from the KXA effect on nonneuronal or neuronal cell types. Genes along the dashed line have equal LFC and zero interaction effect. (D and E) Fluorescence in situ hybridization for male and female mice 2 hours after saline or KXA injection in VISp. (D) Example high-magnification images of mRNA probes against Fkbp5 (green) and Cx3cr1 (magenta, microglia), counterstained with the nuclei dye Hoechst (blue), which provides the nucleus contour (white dashed line). Scale bars, 2 μm. (E) Bar chart of the mean Fkbp5 mRNA puncta within the Hoechst contour with SEM. Each dot represents one microglial contour, 20 cells per animal, three animals per condition. One-way nested ANOVA with selected Tukey’s multiple comparisons post hoc test, **P < 0.01 and ***P < 0.001. (F and G) Fkbp51 protein expression 4 hours after saline or KXA injection in the VISp, layers III-V of males and females. (F) Example immunofluorescence images for Iba1 (green) and Fkbp51 (magenta), counterstained with the nuclei dye Hoechst (blue). White arrowheads, Fkbp51 localization within Iba1+ microglia. Scale bars, 5 μm. (G) Bar chart showing the mean percentage of Fkbp51 volume in microglia, with ±SEM. Each dot represents an animal, five animals per condition. Two-way ANOVA with selected Tukey’s multiple comparisons post hoc test, ***P < 0.001.

“We didn’t expect to see this; it was a surprising finding,” said SandrSiegert, professor at the Institute of Science and Technology Austria and senior author of the study. Microglia are the brain’s defense system—immune cells that help clear debris, trigger inflammation to protect the brain, and maintain optimal brain function.

A pathway to neuroplasticity

Importantly, scientists uncovered the precise pathway of this increased neuroplasticity: during recovery from ketamine anesthesia, corticosterone spiked in the blood. Corticosterone is an important hormone that helps animals respond to stress. This hormone triggered microglia to turn on the Fkbp5 gene, which then produces the FKBP51 protein. This protein in turn activated the microglia to start intermingling with surrounding neurons, which eventually led to an increase in neuroplasticity. Scientists at the Allen Institute performed single-nucleus RNA sequencing to help uncover this hidden pathway and reveal the specific gene that was turned on in female mice but not in males.

Neuroplasticity is a delicate balance: too much or too little has both been linked to neuropsychiatric disorders.

“Understanding how to balance good plasticity versus maladaptive plasticity is very important for healthy life, healthy aging, and neuropsychiatric diseases,” said Bosiljka Tasic, Director of Molecular Genetics at the Allen Institute and one of the study co-authors. “How can you modify and modulate this plasticity but in a positive way? Many of the major plasticity-inducing drugs have become quite interesting, especially as treatments for depression, but we still don’t know how they work.”

The new research reveals that at least in female mice, the FKBP51 protein can be a lever to pull in order to regulate neuroplasticity in the brain, and that ketamine can be one way to pull this lever. The findings, if fully replicated in humans, point to the importance of sex differences when evaluating the effects of drugs and treatments. “How drug effects differ between males and females is important to know in order to offer the best treatment,” said Siegert.

In immunology, it is known that immune cells respond differently between males and females, which can lead to different outcomes in infectious diseases.

“Microglia, which have capabilities similar to macrophages, are not necessarily excluded from this assumption,” said Siegert. “It is only now that scientists are exploring this topic.”

SourceThe Allen Institute

Venturino A, Alamalhoda M, Negrello T, Jin K, van Velthoven CTJ, Cubero RJA, Yeung J, Koppensteiner P, Tasic B, Siegert S. (2026) Corticosterone-linked microglial activity underpins sexually dimorphic neuroplasticity after ketamine anesthesia. Science Advances 12(31): eadz6517. [article]

The surprising finding could help scientists develop better treatments for depression

Doctors use ketamine on patients as general anesthesia before surgery. They also prescribe it in low doses for pain management, and more recently, it’s been used for treatment-resistant depression where other drugs have failed. It works by dampening communication between brain cells. But a new study reveals that its effects on the brain are different in male and female mice. This insight—if reproduced in humans—could change the way we test the efficacy of drugs and unlock better treatments for depression.

Researchers at the Institute of Science and Technology Austria, in collaboration with scientists at the Allen Institute, discovered that when female mice are recovering from a single ketamine sedation, their brains become much more active than their male counterparts, specifically their microglia. These specialized brain cells began reaching out with their branch-like arms to intermingle with surrounding brain cells. This increased activity led to the removal of the extracellular matrix—the proteins and molecules surrounding, supporting, and giving structure to cells—and created space that allowed new synapses to form and remodel the neural network, thereby increasing neuroplasticity. Researchers didn’t observe this behavior in male mice.

Microglia up-regulate the stress mediator Fkbp5/Fkbp51

rna-seq

(A) Experimental strategy for single-nuclei multiome sequencing. Primary visual cortex (VISp) of female mice microdissected 2 hours after saline or KXA treatment. (B) Uniform Manifold Approximation and Projection (UMAP) visualization of single-nucleus transcriptomes and cell type assignment. (C) Log fold change (LFC) estimates from KXA treatment on nonneuronal (astrocytes and microglia) versus neuronal cell types. Size and yellow intensity of points are proportional to the log10(P value) from ANOVA for interaction between ketamine effect and astrocytes/microglia cell type (see Materials and Methods). Error bars: 90% confidence intervals inferred from the KXA effect on nonneuronal or neuronal cell types. Genes along the dashed line have equal LFC and zero interaction effect. (D and E) Fluorescence in situ hybridization for male and female mice 2 hours after saline or KXA injection in VISp. (D) Example high-magnification images of mRNA probes against Fkbp5 (green) and Cx3cr1 (magenta, microglia), counterstained with the nuclei dye Hoechst (blue), which provides the nucleus contour (white dashed line). Scale bars, 2 μm. (E) Bar chart of the mean Fkbp5 mRNA puncta within the Hoechst contour with SEM. Each dot represents one microglial contour, 20 cells per animal, three animals per condition. One-way nested ANOVA with selected Tukey’s multiple comparisons post hoc test, **P < 0.01 and ***P < 0.001. (F and G) Fkbp51 protein expression 4 hours after saline or KXA injection in the VISp, layers III-V of males and females. (F) Example immunofluorescence images for Iba1 (green) and Fkbp51 (magenta), counterstained with the nuclei dye Hoechst (blue). White arrowheads, Fkbp51 localization within Iba1+ microglia. Scale bars, 5 μm. (G) Bar chart showing the mean percentage of Fkbp51 volume in microglia, with ±SEM. Each dot represents an animal, five animals per condition. Two-way ANOVA with selected Tukey’s multiple comparisons post hoc test, ***P < 0.001.

“We didn’t expect to see this; it was a surprising finding,” said SandrSiegert, professor at the Institute of Science and Technology Austria and senior author of the study. Microglia are the brain’s defense system—immune cells that help clear debris, trigger inflammation to protect the brain, and maintain optimal brain function.

A pathway to neuroplasticity

Importantly, scientists uncovered the precise pathway of this increased neuroplasticity: during recovery from ketamine anesthesia, corticosterone spiked in the blood. Corticosterone is an important hormone that helps animals respond to stress. This hormone triggered microglia to turn on the Fkbp5 gene, which then produces the FKBP51 protein. This protein in turn activated the microglia to start intermingling with surrounding neurons, which eventually led to an increase in neuroplasticity. Scientists at the Allen Institute performed single-nucleus RNA sequencing to help uncover this hidden pathway and reveal the specific gene that was turned on in female mice but not in males.

Neuroplasticity is a delicate balance: too much or too little has both been linked to neuropsychiatric disorders.

“Understanding how to balance good plasticity versus maladaptive plasticity is very important for healthy life, healthy aging, and neuropsychiatric diseases,” said Bosiljka Tasic, Director of Molecular Genetics at the Allen Institute and one of the study co-authors. “How can you modify and modulate this plasticity but in a positive way? Many of the major plasticity-inducing drugs have become quite interesting, especially as treatments for depression, but we still don’t know how they work.”

The new research reveals that at least in female mice, the FKBP51 protein can be a lever to pull in order to regulate neuroplasticity in the brain, and that ketamine can be one way to pull this lever. The findings, if fully replicated in humans, point to the importance of sex differences when evaluating the effects of drugs and treatments. “How drug effects differ between males and females is important to know in order to offer the best treatment,” said Siegert.

In immunology, it is known that immune cells respond differently between males and females, which can lead to different outcomes in infectious diseases.

“Microglia, which have capabilities similar to macrophages, are not necessarily excluded from this assumption,” said Siegert. “It is only now that scientists are exploring this topic.”

SourceThe Allen Institute

Venturino A, Alamalhoda M, Negrello T, Jin K, van Velthoven CTJ, Cubero RJA, Yeung J, Koppensteiner P, Tasic B, Siegert S. (2026) Corticosterone-linked microglial activity underpins sexually dimorphic neuroplasticity after ketamine anesthesia. Science Advances 12(31): eadz6517. [article]

Submit a Post to the Blog

SUBMIT CONTENT

Subscribe to the RNA-Seq Blog

RNA-Seq Products & Services