Researchers from the University of Illinois-Champaign have introduced a groundbreaking technique called Nanocoding that advances single-cell RNA sequencing technology. Single-cell RNA sequencing is a powerful tool used to study the activity of genes within individual cells, providing scientists with detailed insights into how cells work, how they differ from one another, and how they respond to diseases or treatments.
One challenge in single-cell RNA sequencing is efficiently processing large numbers of cells at once while keeping track of which RNA came from which cell. Nanocoding offers an elegant solution to this problem by using lipid nanoparticles, which are tiny, fat-based particles that can carry unique molecular tags or “barcodes.” These barcodes label individual cells so that multiple cells can be mixed together and analyzed in a single experiment without losing the ability to identify the source of each RNA molecule.
The unique barcoding system developed with Nanocoding allows researchers to analyze many cells simultaneously, increasing throughput and reducing the cost and time required for experiments. Moreover, the lipid nanoparticles are specially designed to enter cells effectively and attach barcodes in a reliable and reproducible manner. This improves the accuracy of identifying and quantifying gene expression in each cell.
Understanding gene activity at the single-cell level is crucial because tissues and organs are made up of diverse cell types, each playing different roles. Diseases such as cancer, autoimmune disorders, and neurological conditions can affect some cells differently than others. By enabling multiplexed analysis of individual cells, Nanocoding helps scientists uncover complex biological patterns that would be impossible to see when looking at large groups of cells together.
This technology has broad potential applications, including better disease diagnosis, monitoring treatment responses, and advancing personalized medicine. With Nanocoding, the future of cellular research looks more detailed, faster, and more cost-effective, opening new doors to understanding biology at the smallest scales.
Feng Y, Chen D, Applegate C, Gonzalez Medina N, Kuo CW, Arogundade OH, Wright CL, Xu F, Drnevich J, Smith AM. (2025) Nanocoding: lipid nanoparticle barcoding for multiplexed single-cell RNA sequencing. ACS Nano [article]
Researchers from the University of Illinois-Champaign have introduced a groundbreaking technique called Nanocoding that advances single-cell RNA sequencing technology. Single-cell RNA sequencing is a powerful tool used to study the activity of genes within individual cells, providing scientists with detailed insights into how cells work, how they differ from one another, and how they respond to diseases or treatments.
One challenge in single-cell RNA sequencing is efficiently processing large numbers of cells at once while keeping track of which RNA came from which cell. Nanocoding offers an elegant solution to this problem by using lipid nanoparticles, which are tiny, fat-based particles that can carry unique molecular tags or “barcodes.” These barcodes label individual cells so that multiple cells can be mixed together and analyzed in a single experiment without losing the ability to identify the source of each RNA molecule.
The unique barcoding system developed with Nanocoding allows researchers to analyze many cells simultaneously, increasing throughput and reducing the cost and time required for experiments. Moreover, the lipid nanoparticles are specially designed to enter cells effectively and attach barcodes in a reliable and reproducible manner. This improves the accuracy of identifying and quantifying gene expression in each cell.
Understanding gene activity at the single-cell level is crucial because tissues and organs are made up of diverse cell types, each playing different roles. Diseases such as cancer, autoimmune disorders, and neurological conditions can affect some cells differently than others. By enabling multiplexed analysis of individual cells, Nanocoding helps scientists uncover complex biological patterns that would be impossible to see when looking at large groups of cells together.
This technology has broad potential applications, including better disease diagnosis, monitoring treatment responses, and advancing personalized medicine. With Nanocoding, the future of cellular research looks more detailed, faster, and more cost-effective, opening new doors to understanding biology at the smallest scales.
Feng Y, Chen D, Applegate C, Gonzalez Medina N, Kuo CW, Arogundade OH, Wright CL, Xu F, Drnevich J, Smith AM. (2025) Nanocoding: lipid nanoparticle barcoding for multiplexed single-cell RNA sequencing. ACS Nano [article]












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