New technique to prepare single cells for study of parasitic infections
A novel technique that isolates individual gut cells from mice with intestinal parasites may yield new insights on the immune response to these infections.
Larvae from the parasite Heligmosomoides polygyrus bakeri, shown here in green, develop within the intestinal tissue, with cells shown in blue. Credit: Ferrer-Font et al. (CC BY 4.0)
Intestinal parasites are a serious threat to both humans and livestock in large parts of Africa, South America and Asia. The findings in mice may help scientists understand how adult parasites evade the immune system and to test ways to boost the immune response to fight these infections.
A parasite’s larvae may infect humans and other organisms through contaminated food or by penetrating bare skin. Once the parasites grow into adults inside the body, the immune system has a hard time getting rid of them and scientists have found it challenging to study immune cells in infected tissues.
“One big problem has been the difficulty to extract immune cells from an infected gut, as the infection causes very strong local reactions such as intense cellular slime production to try and flush the worms out,” says senior author Johannes Mayer, PhD, Research Fellow at the Malaghan Institute of Medical Research in Wellington, New Zealand.
Mayer and colleagues tested many different ways to extract immune cells from the guts of mice infected with an intestinal parasite called Heligmosomoides polygyrus bakeri. Most of their attempts failed, but they eventually developed a technique that isolated millions of immune cells from the infected animals’ guts. The technique involves three washes with EDTA, an agent to remove the mucus, lasting for 10 minutes. This is followed by 30 minutes in a solution of enzymes that help break down the tissue into individual cells, and then cell filtration.
“This allowed us to study the individual immune cells for the first time,” explains lead author Laura Ferrer-Font, PhD, Staff Scientist at the Malaghan Institute of Medical Research. “We used a new technology called spectral flow cytometry to look at many different types of immune cells all at the same time, and identified various changes that take place throughout the course of parasitic infection.”
The team also verified that the immune changes they saw in the cells were representative of the immune changes that occurred in the tissue taken from the infected animals, ensuring that the cell-extraction process did not skew their findings.
The current annotation count on this page is 0.“Now that we have found a way to extract immune cells from parasite-infected guts, we can start to answer important questions about the immune response,” Mayer concludes. “This technique will enable scientists to use powerful tools like single-cell RNA sequencing to study the immune response in different hosts. It might also help those studying inflammatory bowel disorders or food allergies to extract single cells from the gut for further investigation.”
A novel technique that isolates individual gut cells from mice with intestinal parasites may yield new insights on the immune response to these infections.
Larvae from the parasite Heligmosomoides polygyrus bakeri, shown here in green, develop within the intestinal tissue, with cells shown in blue. Credit: Ferrer-Font et al. (CC BY 4.0)
Intestinal parasites are a serious threat to both humans and livestock in large parts of Africa, South America and Asia. The findings in mice may help scientists understand how adult parasites evade the immune system and to test ways to boost the immune response to fight these infections.
A parasite’s larvae may infect humans and other organisms through contaminated food or by penetrating bare skin. Once the parasites grow into adults inside the body, the immune system has a hard time getting rid of them and scientists have found it challenging to study immune cells in infected tissues.
“One big problem has been the difficulty to extract immune cells from an infected gut, as the infection causes very strong local reactions such as intense cellular slime production to try and flush the worms out,” says senior author Johannes Mayer, PhD, Research Fellow at the Malaghan Institute of Medical Research in Wellington, New Zealand.
Mayer and colleagues tested many different ways to extract immune cells from the guts of mice infected with an intestinal parasite called Heligmosomoides polygyrus bakeri. Most of their attempts failed, but they eventually developed a technique that isolated millions of immune cells from the infected animals’ guts. The technique involves three washes with EDTA, an agent to remove the mucus, lasting for 10 minutes. This is followed by 30 minutes in a solution of enzymes that help break down the tissue into individual cells, and then cell filtration.
“This allowed us to study the individual immune cells for the first time,” explains lead author Laura Ferrer-Font, PhD, Staff Scientist at the Malaghan Institute of Medical Research. “We used a new technology called spectral flow cytometry to look at many different types of immune cells all at the same time, and identified various changes that take place throughout the course of parasitic infection.”
The team also verified that the immune changes they saw in the cells were representative of the immune changes that occurred in the tissue taken from the infected animals, ensuring that the cell-extraction process did not skew their findings.
The current annotation count on this page is 0.“Now that we have found a way to extract immune cells from parasite-infected guts, we can start to answer important questions about the immune response,” Mayer concludes. “This technique will enable scientists to use powerful tools like single-cell RNA sequencing to study the immune response in different hosts. It might also help those studying inflammatory bowel disorders or food allergies to extract single cells from the gut for further investigation.”
A novel technique that isolates individual gut cells from mice with intestinal parasites may yield new insights on the immune response to these infections.
Larvae from the parasite Heligmosomoides polygyrus bakeri, shown here in green, develop within the intestinal tissue, with cells shown in blue. Credit: Ferrer-Font et al. (CC BY 4.0)
Intestinal parasites are a serious threat to both humans and livestock in large parts of Africa, South America and Asia. The findings in mice may help scientists understand how adult parasites evade the immune system and to test ways to boost the immune response to fight these infections.
A parasite’s larvae may infect humans and other organisms through contaminated food or by penetrating bare skin. Once the parasites grow into adults inside the body, the immune system has a hard time getting rid of them and scientists have found it challenging to study immune cells in infected tissues.
“One big problem has been the difficulty to extract immune cells from an infected gut, as the infection causes very strong local reactions such as intense cellular slime production to try and flush the worms out,” says senior author Johannes Mayer, PhD, Research Fellow at the Malaghan Institute of Medical Research in Wellington, New Zealand.
Mayer and colleagues tested many different ways to extract immune cells from the guts of mice infected with an intestinal parasite called Heligmosomoides polygyrus bakeri. Most of their attempts failed, but they eventually developed a technique that isolated millions of immune cells from the infected animals’ guts. The technique involves three washes with EDTA, an agent to remove the mucus, lasting for 10 minutes. This is followed by 30 minutes in a solution of enzymes that help break down the tissue into individual cells, and then cell filtration.
The team also verified that the immune changes they saw in the cells were representative of the immune changes that occurred in the tissue taken from the infected animals, ensuring that the cell-extraction process did not skew their findings.
Source – eLIFE
Ferrer-Font L, Mehta P, Harmos P, Schmidt AJ, Chappell S, Price KM, Hermans IF, Ronchese F, le Gros G, Mayer JU. (2020) High-dimensional analysis of intestinal immune cells during helminth infection. Elife 11;9. [abstract]
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A novel technique that isolates individual gut cells from mice with intestinal parasites may yield new insights on the immune response to these infections.
Larvae from the parasite Heligmosomoides polygyrus bakeri, shown here in green, develop within the intestinal tissue, with cells shown in blue. Credit: Ferrer-Font et al. (CC BY 4.0)
Intestinal parasites are a serious threat to both humans and livestock in large parts of Africa, South America and Asia. The findings in mice may help scientists understand how adult parasites evade the immune system and to test ways to boost the immune response to fight these infections.
A parasite’s larvae may infect humans and other organisms through contaminated food or by penetrating bare skin. Once the parasites grow into adults inside the body, the immune system has a hard time getting rid of them and scientists have found it challenging to study immune cells in infected tissues.
“One big problem has been the difficulty to extract immune cells from an infected gut, as the infection causes very strong local reactions such as intense cellular slime production to try and flush the worms out,” says senior author Johannes Mayer, PhD, Research Fellow at the Malaghan Institute of Medical Research in Wellington, New Zealand.
Mayer and colleagues tested many different ways to extract immune cells from the guts of mice infected with an intestinal parasite called Heligmosomoides polygyrus bakeri. Most of their attempts failed, but they eventually developed a technique that isolated millions of immune cells from the infected animals’ guts. The technique involves three washes with EDTA, an agent to remove the mucus, lasting for 10 minutes. This is followed by 30 minutes in a solution of enzymes that help break down the tissue into individual cells, and then cell filtration.
The team also verified that the immune changes they saw in the cells were representative of the immune changes that occurred in the tissue taken from the infected animals, ensuring that the cell-extraction process did not skew their findings.
Source – eLIFE
Ferrer-Font L, Mehta P, Harmos P, Schmidt AJ, Chappell S, Price KM, Hermans IF, Ronchese F, le Gros G, Mayer JU. (2020) High-dimensional analysis of intestinal immune cells during helminth infection. Elife 11;9. [abstract]
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RNA sequencing reveals functional chimeric mRNAs in mammalian immunity
Atlas of the brain’s striatum could guide researchers to new drug treatments
Immune cells offer insights on billion-dollar virus
A functionally integrated cross-tissue alternative splicing program during short-term calorie restriction
Dietary oxidized plant sterol shifts macrophage state to fuel aortic inflammation
Unlocking the past – new method helps gain insights into old tissue
Novel AI model trained on RNA-Seq data accurately detects key gene mutations and predicts biomarkers across 32 cancer types
Transcriptomic aging clock reveals age-related molecular patterns in opioid dependence
RNA sequencing helps predict stem cell transplant benefit in pediatric AML
Protein ‘switch’ determines whether liposarcoma cells will become aggressive
Precursor tRNAs sense temperature changes: heat stress-induced capped pre-tRNAs suppress protein synthesis
Ketamine increases neuroplasticity in female mice but not in males
Somatic mutations linked to vascular damage in progeria
Scientists map dormant cancer cells’ hideouts, opening new targets for treatment
Soluble signals released by neighboring cells direct how the human kidney is built
Genetics influence how cancer arises – and how it evolves
RNA-based testing uncovers extraordinary diversity in mutations driving lung cancer
Study offers new insights into why ex-smokers remain at elevated risk of lung disease
Learning the grammar of gene regulation
New findings could transform new treatment for rare brain tumor astroblastoma
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