Omics Pipe – A Computational Framework for Reproducible Multi-Omics Data Analysis

Omics Pipe is a computational framework for reproducible multi-omics data analysis that supports several next generation sequencing best practice pipelines, such as RNA-seq, miRNA-seq, Exome-seq, whole genome-seq and ChIP-seq. The purpose of Omics Pipe is to provide researchers with an open source tool to perform reproducible best practice analyses and to serve as a framework for extension by the broader scientific community.

rna-seq

Availability – Omics Pipe can be found at the Bitbucket repository – https://bitbucket.org/sulab/omics_pipe.

Contact – Kathleen Fisch, Ph.D. Research Associate Department of Molecular and Experimental Medicine The Scripps Research Institute La Jolla, CA – Email: [email protected]

Fisch KM, Meißner T, Gioia L, Ducom JC, Carland T, Loguercio S, Su AI. (2014) Omics Pipe: A Computational Framework for Reproducible Multi-Omics Data Analysis. bioRxiv reprint. [abstract]