RNA-Seq Presentations at AACR 2015

Session Start Time
Presentation Time
Location
Pres #
& Type
Poster Board # Abstract Title
Session # & Title
(Click on title for Presentation info)
Sat 4/18 1:00 PM
2:30 PM – 2:55 PM

Room 115, Pennsylvania Convention Center
Methods Workshop Single cell RNA-sequencing of circulating tumor cellsMW03.Advances and Applications of Single Cell Sequencing Technologies in Cancer Research
Sun 4/19 1:00 PM
1:00 PM – 5:00 PM

Section 7
148
Poster Session
7 Transcriptome sequencing reveals PCAT5 – new ERG-regulated non-coding transcript in prostate cancerPO.MCB13.01.Long Non-Coding RNAs
Sun 4/19 1:00 PM
1:00 PM – 5:00 PM

Section 7
151
Poster Session
10 Transcriptome-wide expression profiling of long noncoding and small nucleolar RNAs in head and neck squamous cell carcinomas identifies novel transcripts associated with survivalPO.MCB13.01.Long Non-Coding RNAs
Sun 4/19 1:00 PM
1:00 PM – 5:00 PM

Section 7
169
Poster Session
28 Metastatic colorectal cancer associated long non-coding RNAs identified by transcriptome sequencing of matched primary and metastatic patient tissuesPO.MCB13.01.Long Non-Coding RNAs
Sun 4/19 1:00 PM
1:00 PM – 5:00 PM

Section 37
902
Poster Session
14 RNA-Seq profiling of silibinin effects on bladder cancer cellsPO.PR01.01.Modeling Cancer Prevention
Sun 4/19 1:00 PM
1:00 PM – 5:00 PM

Section 22
CT112
Poster Session
3 Implementation of CLIA enabled integrated whole genome (WGS)/exome (WES)/transcriptome (RNAseq) next-gen sequencing to identify therapeutically relevant targets in advanced cancer patientsPO.CT01.02.Phase II, III, and Special Population Clinical Trials
Mon 4/20 8:00 AM
8:00 AM – 12:00 PM

Section 5
1115
Poster Session
17 Targeted RNA sequencing improves transcript analysis in cancer samplesPO.MCB10.02.Functional Genomics
Mon 4/20 8:00 AM
8:00 AM – 12:00 PM

Section 5
1120
Poster Session
22 Glioblastoma whole transcriptome analysis: molecular mechanisms related to recurrence-free survival (RFS)PO.MCB10.02.Functional Genomics
Mon 4/20 8:00 AM
8:00 AM – 12:00 PM

Section 9
1224
Poster Session
13 Identification of novel p53 targets by RNA sequencing in mice liver tissuesPO.MCB04.03.Nuclear Tumor Suppressors
Mon 4/20 8:00 AM
8:00 AM – 12:00 PM

Section 12
1307
Poster Session
6 Assessment of gene expression in peripheral blood from patients with advanced melanoma using RNA-seq before and after treatment with anti-PD-1 therapy with pembrolizumab (MK-3475)PO.IM02.07.Immune Monitoring/Biomarkers
Mon 4/20 1:00 PM
1:00 PM – 5:00 PM

Section 2
1932
Poster Session
12 RNA-seq differential transcription analysis of TCGA colorectal cancer (CRC) transcriptomes reveals subtype-specific isoform usagePO.MCB11.02.Biological Conclusions from Computational Approaches
Mon 4/20 1:00 PM
1:00 PM – 5:00 PM

Section 2
1938
Poster Session
18 Comprehesive RNA-sequencing pipeline of cancer xenograft modelsPO.MCB11.02.Biological Conclusions from Computational Approaches
Mon 4/20 1:00 PM
1:00 PM – 5:00 PM

Section 9
2126
Poster Session
19 Comprehensive transcriptome analysis reveals that nonsense-mediated mRNA decay is not globally suppressed in lung adenocarcinomasPO.MCB05.02.Post-Transcriptional and Translational Control
Mon 4/20 1:00 PM
1:00 PM – 5:00 PM

Section 12
2191
Poster Session
2 Transcriptome analysis demonstrates the ability of the bromodomain inhibitor JQ1 to attenuate expression of common oncogenes heterogeneously expressed among chronic lymphocytic leukemia subsetsPO.MCB05.05.Transcriptional Deregulation
Mon 4/20 1:00 PM
1:00 PM – 5:00 PM

Section 12
2214
Poster Session
25 Dynamic transcriptome analysis of DNA damage pathways under hypoxiaPO.MCB05.05.Transcriptional Deregulation
Tue 4/21 8:00 AM
8:00 AM – 12:00 PM

Section 4
2978
Poster Session
13 An integrated comparative analysis of TCGA lung adenocarcioma and lung squamous cell carcinoma copy number and RNA-Seq expression dataPO.MCB10.03.Genomics 1
Tue 4/21 8:00 AM
8:00 AM – 12:00 PM

Section 9
3095
Poster Session
8 Longitudinal integrative whole transcriptome and exome sequencing identifies genes that reprogram lymphoma cells for clinical response to CDK4/6 inhibition in combination therapyPO.MCB07.02.Targeting Cyclin-Dependent Kinases and Checkpoint Kinases for Cancer Therapy
Tue 4/21 8:00 AM
8:00 AM – 12:00 PM

Section 14
3218
Poster Session
30 Transcriptome characterization by RNA sequencing identifies molecular and clinical subgroups in high risk neuroblastomaPO.TB06.08.Dynamic Regulation of the Tumor Microenvironment
Tue 4/21 8:00 AM
8:00 AM – 12:00 PM

Section 15
3248
Poster Session
30 Establishment and characterization of primary penile carcinoma cell culture versus xenograft by using transcriptome analysisPO.TB01.03.Human-in-Mouse Models of Cancer 2
Tue 4/21 1:00 PM
1:00 PM – 5:00 PM

Section 1
3748
Poster Session
5 Transcriptome landscape of brain tumor progression at single-cell resolutionPO.MCB14.01.Cancer Systems Biology
Tue 4/21 1:00 PM
1:00 PM – 5:00 PM

Section 3
3803
Poster Session
11 Transcriptome analysis of MCF7 breast cancer cells with different expression profile of PAR-4 (prostate apoptosis response-4) in the presence and absence of docetaxelPO.MCB02.03.Cell Death Therapies 2
Tue 4/21 1:00 PM
1:00 PM – 5:00 PM

Section 4
3828
Poster Session
11 Genomic, transcriptome and epigenomic analysis reveal new genetic pathways in penile carcinomaPO.MCB06.04.Epigenetic Changes in Cancer 1
Tue 4/21 1:00 PM
1:00 PM – 5:00 PM

Section 6
3882
Poster Session
9 Clinical exome and transcriptome sequencing for identification of actionable cancer targets: A pilot study for children and young adults with relapsed or refractory solid tumorsPO.MCB10.04.Genomics 2
Wed 4/22 8:00 AM
8:00 AM – 12:00 PM

Section 1
4750
Poster Session
16 Transcriptome sequencing of the Reed-Sternberg cells of classical Hodgkin lymphomaPO.MCB12.01.Advances in Genomics and Transcriptomics
Wed 4/22 8:00 AM
8:00 AM – 12:00 PM

Section 3
4804
Poster Session
14 High throughput whole exome DNA and transcriptome RNA sequencing to identify genetic drivers and alterations in HPV-negative and HPV-positive HNSCC cell linesPO.MCB10.05.Genomics 3
Wed 4/22 8:00 AM
8:00 AM – 12:00 PM

Section 5
4852
Poster Session
4 Performances evaluation of algorithms for identifying differentially expressed genes in RNA-seq dataPO.MCB11.01.Methods and Tools in Computational Cancer Biology
Wed 4/22 8:00 AM
8:00 AM – 12:00 PM

Section 5
4859
Poster Session
11 Development of a cancer transcriptome analysis toolkit: identification of gene fusions in chronic lymphocytic leukemiaPO.MCB11.01.Methods and Tools in Computational Cancer Biology
Wed 4/22 8:00 AM
8:00 AM – 12:00 PM

Section 5
4867
Poster Session
19 Comparative analysis of RNA sequencing methods for characterization of cancer transcriptomicsPO.MCB11.01.Methods and Tools in Computational Cancer Biology
Wed 4/22 8:00 AM
8:00 AM – 12:00 PM

Section 5
4875
Poster Session
27 HIVE Proteomics: Integrated, cloud-based RNA-Seq and proteomics analysis of prostate adenocarcinoma samplesPO.MCB11.01.Methods and Tools in Computational Cancer Biology
Wed 4/22 8:00 AM
8:00 AM – 12:00 PM

Section 6
4901
Poster Session
24 Comparison of gene expression platforms: RNA-Seq, Fluidigm, and NanostringPO.MCB12.02.New Developments in Sequencing
Wed 4/22 8:00 AM
8:00 AM – 12:00 PM

Section 12
5057
Poster Session
20 Single-cell RNA-seq analysis of heterogeneous populations within gastroenteropancreatic neuroendocrine tumors: the role of Sox transcription factorsPO.EN01.02.Molecular Endocrinology of Cancer 2

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